Investigating the Causal Effects of Exercise-Induced Genes on Sarcopenia

被引:1
作者
Wang, Li [1 ]
Zhang, Song [2 ]
机构
[1] Chengdu Sport Univ, Inst Sports Med & Hlth, Chengdu 610041, Peoples R China
[2] Northwest A&F Univ, Coll Anim Sci & Technol, Yangling 712100, Peoples R China
关键词
exercise; skeletal muscle aging; sarcopenia; transcriptome; two-sample Mendelian randomization; SKELETAL-MUSCLE; DIFFERENTIAL EXPRESSION; MICRORNA; PROLIFERATION; RESISTANCE; PROFILES; MIR-206; PACKAGE; BINDING; PROTEIN;
D O I
10.3390/ijms251910773
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Exercise is increasingly recognized as an effective strategy to counteract skeletal muscle aging and conditions such as sarcopenia. However, the specific exercise-induced genes responsible for these protective effects remain unclear. To address this, we conducted an eight-week aerobic exercise regimen on late-middle-aged mice and developed an integrated approach that combines mouse exercise-induced genes with human GWAS datasets to identify causal genes for sarcopenia. This approach led to significant improvements in the skeletal muscle phenotype of the mice and the identification of exercise-induced genes and miRNAs. By constructing a miRNA regulatory network enriched with transcription factors and GWAS signals related to muscle function and traits, we focused on 896 exercise-induced genes. Using human skeletal muscle cis-eQTLs as instrumental variables, 250 of these exercise-induced genes underwent two-sample Mendelian randomization analysis, identifying 40, 68, and 62 causal genes associated with sarcopenia and its clinical indicators-appendicular lean mass (ALM) and hand grip strength (HGS), respectively. Sensitivity analyses and cross-phenotype validation confirmed the robustness of our findings. Consistently across the three outcomes, RXRA, MDM1, RBL2, KCNJ2, and ADHFE1 were identified as risk factors, while NMB, TECPR2, MGAT3, ECHDC2, and GINM1 were identified as protective factors, all with potential as biomarkers for sarcopenia progression. Biological activity and disease association analyses suggested that exercise exerts its anti-sarcopenia effects primarily through the regulation of fatty acid oxidation. Based on available drug-gene interaction data, 21 of the causal genes are druggable, offering potential therapeutic targets. Our findings highlight key genes and molecular pathways potentially responsible for the anti-sarcopenia benefits of exercise, offering insights into future therapeutic strategies that could mimic the safe and mild protective effects of exercise on age-related skeletal muscle degeneration.
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页数:17
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共 101 条
[41]   Muscle-specific microRNA miR-206 promotes muscle differentiation [J].
Kim, Hak Kyun ;
Lee, Yong Sun ;
Sivaprasad, Umasundari ;
Malhotra, Ankit ;
Dutta, Anindya .
JOURNAL OF CELL BIOLOGY, 2006, 174 (05) :677-687
[42]   Enrichr: a comprehensive gene set enrichment analysis web server 2016 update [J].
Kuleshov, Maxim V. ;
Jones, Matthew R. ;
Rouillard, Andrew D. ;
Fernandez, Nicolas F. ;
Duan, Qiaonan ;
Wang, Zichen ;
Koplev, Simon ;
Jenkins, Sherry L. ;
Jagodnik, Kathleen M. ;
Lachmann, Alexander ;
McDermott, Michael G. ;
Monteiro, Caroline D. ;
Gundersen, Gregory W. ;
Ma'ayan, Avi .
NUCLEIC ACIDS RESEARCH, 2016, 44 (W1) :W90-W97
[43]   Age-associated inflammation and implications for skeletal muscle responses to exercise [J].
Kunz, Hawley E. ;
Lanza, Ian R. .
EXPERIMENTAL GERONTOLOGY, 2023, 177
[44]   Commentary: Two-sample Mendelian randomization: opportunities and challenges [J].
Lawlor, Debbie A. .
INTERNATIONAL JOURNAL OF EPIDEMIOLOGY, 2016, 45 (03) :908-915
[45]   PHYSICAL FRAILTY IN OLDER ADULTS IS ASSOCIATED WITH METABOLIC AND ATHEROSCLEROTIC RISK FACTORS AND COGNITIVE IMPAIRMENT INDEPENDENT OF MUSCLE MASS [J].
Lee, J. S. W. ;
Auyeung, T. -W. ;
Leung, J. ;
Kwok, T. ;
Leung, P. -C. ;
Woo, J. .
JOURNAL OF NUTRITION HEALTH & AGING, 2011, 15 (10) :857-862
[46]   Complexity of the microRNA repertoire revealed by next-generation sequencing [J].
Lee, Lik Wee ;
Zhang, Shile ;
Etheridge, Alton ;
Ma, Li ;
Martin, Dan ;
Galas, David ;
Wang, Kai .
RNA, 2010, 16 (11) :2170-2180
[47]   Loss of microRNA-23-27-24 clusters in skeletal muscle is not influential in skeletal muscle development and exercise-induced muscle adaptation [J].
Lee, Minjung ;
Wada, Shogo ;
Oikawa, Satoshi ;
Suzuki, Katsuhiko ;
Ushida, Takashi ;
Akimoto, Takayuki .
SCIENTIFIC REPORTS, 2019, 9 (1)
[48]   starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data [J].
Li, Jun-Hao ;
Liu, Shun ;
Zhou, Hui ;
Qu, Liang-Hu ;
Yang, Jian-Hua .
NUCLEIC ACIDS RESEARCH, 2014, 42 (D1) :D92-D97
[49]   Aerobic Exercise Prevents Chronic Inflammation and Insulin Resistance in Skeletal Muscle of High-Fat Diet Mice [J].
Li, Nan ;
Shi, Haiyan ;
Guo, Qiaofeng ;
Gan, Yanming ;
Zhang, Yuhang ;
Jia, Jiajie ;
Zhang, Liang ;
Zhou, Yue .
NUTRIENTS, 2022, 14 (18)
[50]   Integrating Mouse and Human Genetic Data to Move beyond GWAS and Identify Causal Genes in Cholesterol Metabolism [J].
Li, Zhonggang ;
Votava, James A. ;
Zajac, Gregory J. M. ;
Nguyen, Jenny N. ;
Jaimes, Fernanda B. Leyva ;
Ly, Sophia M. ;
Brinkman, Jacqueline A. ;
De Giorgi, Marco ;
Kaul, Sushma ;
Green, Cara L. ;
St Clair, Samantha L. ;
Belisle, Sabrina L. ;
Rios, Julia M. ;
Nelson, David W. ;
Sorci-Thomas, Mary G. ;
Lagor, William R. ;
Lamming, Dudley W. ;
Yen, Chi-Liang Eric ;
Parks, Brian W. .
CELL METABOLISM, 2020, 31 (04) :741-+