Investigating the Causal Effects of Exercise-Induced Genes on Sarcopenia

被引:1
作者
Wang, Li [1 ]
Zhang, Song [2 ]
机构
[1] Chengdu Sport Univ, Inst Sports Med & Hlth, Chengdu 610041, Peoples R China
[2] Northwest A&F Univ, Coll Anim Sci & Technol, Yangling 712100, Peoples R China
关键词
exercise; skeletal muscle aging; sarcopenia; transcriptome; two-sample Mendelian randomization; SKELETAL-MUSCLE; DIFFERENTIAL EXPRESSION; MICRORNA; PROLIFERATION; RESISTANCE; PROFILES; MIR-206; PACKAGE; BINDING; PROTEIN;
D O I
10.3390/ijms251910773
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Exercise is increasingly recognized as an effective strategy to counteract skeletal muscle aging and conditions such as sarcopenia. However, the specific exercise-induced genes responsible for these protective effects remain unclear. To address this, we conducted an eight-week aerobic exercise regimen on late-middle-aged mice and developed an integrated approach that combines mouse exercise-induced genes with human GWAS datasets to identify causal genes for sarcopenia. This approach led to significant improvements in the skeletal muscle phenotype of the mice and the identification of exercise-induced genes and miRNAs. By constructing a miRNA regulatory network enriched with transcription factors and GWAS signals related to muscle function and traits, we focused on 896 exercise-induced genes. Using human skeletal muscle cis-eQTLs as instrumental variables, 250 of these exercise-induced genes underwent two-sample Mendelian randomization analysis, identifying 40, 68, and 62 causal genes associated with sarcopenia and its clinical indicators-appendicular lean mass (ALM) and hand grip strength (HGS), respectively. Sensitivity analyses and cross-phenotype validation confirmed the robustness of our findings. Consistently across the three outcomes, RXRA, MDM1, RBL2, KCNJ2, and ADHFE1 were identified as risk factors, while NMB, TECPR2, MGAT3, ECHDC2, and GINM1 were identified as protective factors, all with potential as biomarkers for sarcopenia progression. Biological activity and disease association analyses suggested that exercise exerts its anti-sarcopenia effects primarily through the regulation of fatty acid oxidation. Based on available drug-gene interaction data, 21 of the causal genes are druggable, offering potential therapeutic targets. Our findings highlight key genes and molecular pathways potentially responsible for the anti-sarcopenia benefits of exercise, offering insights into future therapeutic strategies that could mimic the safe and mild protective effects of exercise on age-related skeletal muscle degeneration.
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页数:17
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共 101 条
[1]   Bioelectric signalling via potassium channels: a mechanism for craniofacial dysmorphogenesis in KCNJ2-associated Andersen-Tawil Syndrome [J].
Adams, Dany Spencer ;
Uzel, Sebastien G. M. ;
Akagi, Jin ;
Wlodkowic, Donald ;
Andreeva, Viktoria ;
Yelick, Pamela Crotty ;
Devitt-Lee, Adrian ;
Pare, Jean-Francois ;
Levin, Michael .
JOURNAL OF PHYSIOLOGY-LONDON, 2016, 594 (12) :3245-3270
[2]   Myosin heavy chain-embryonic regulates skeletal muscle differentiation during mammalian development [J].
Agarwal, Megha ;
Sharma, Akashi ;
Kumar, Pankaj ;
Kumar, Amit ;
Bharadwaj, Anushree ;
Saini, Masum ;
Kardon, Gabrielle ;
Mathew, Sam J. .
DEVELOPMENT, 2020, 147 (07)
[3]   The GTEx Consortium atlas of genetic regulatory effects across human tissues [J].
Aguet, Francois ;
Barbeira, Alvaro N. ;
Bonazzola, Rodrigo ;
Brown, Andrew ;
Castel, Stephane E. ;
Jo, Brian ;
Kasela, Silva ;
Kim-Hellmuth, Sarah ;
Liang, Yanyu ;
Parsana, Princy ;
Flynn, Elise ;
Fresard, Laure ;
Gamazon, Eric R. ;
Hamel, Andrew R. ;
He, Yuan ;
Hormozdiari, Farhad ;
Mohammadi, Pejman ;
Munoz-Aguirre, Manuel ;
Ardlie, Kristin G. ;
Battle, Alexis ;
Bonazzola, Rodrigo ;
Brown, Christopher D. ;
Cox, Nancy ;
Dermitzakis, Emmanouil T. ;
Engelhardt, Barbara E. ;
Garrido-Martin, Diego ;
Gay, Nicole R. ;
Getz, Gad ;
Guigo, Roderic ;
Hamel, Andrew R. ;
Handsaker, Robert E. ;
He, Yuan ;
Hoffman, Paul J. ;
Hormozdiari, Farhad ;
Im, Hae Kyung ;
Jo, Brian ;
Kasela, Silva ;
Kashin, Seva ;
Kim-Hellmuth, Sarah ;
Kwong, Alan ;
Lappalainen, Tuuli ;
Li, Xiao ;
Liang, Yanyu ;
MacArthur, Daniel G. ;
Mohammadi, Pejman ;
Montgomery, Stephen B. ;
Munoz-Aguirre, Manuel ;
Rouhana, John M. ;
Hormozdiari, Farhad ;
Im, Hae Kyung .
SCIENCE, 2020, 369 (6509) :1318-1330
[4]   A map of human genome variation from population-scale sequencing [J].
Altshuler, David ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Collins, Francis S. ;
De la Vega, Francisco M. ;
Donnelly, Peter ;
Egholm, Michael ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Knoppers, Bartha M. ;
Lander, Eric S. ;
Lehrach, Hans ;
Mardis, Elaine R. ;
McVean, Gil A. ;
Nickerson, DebbieA. ;
Peltonen, Leena ;
Schafer, Alan J. ;
Sherry, Stephen T. ;
Wang, Jun ;
Wilson, Richard K. ;
Gibbs, Richard A. ;
Deiros, David ;
Metzker, Mike ;
Muzny, Donna ;
Reid, Jeff ;
Wheeler, David ;
Wang, Jun ;
Li, Jingxiang ;
Jian, Min ;
Li, Guoqing ;
Li, Ruiqiang ;
Liang, Huiqing ;
Tian, Geng ;
Wang, Bo ;
Wang, Jian ;
Wang, Wei ;
Yang, Huanming ;
Zhang, Xiuqing ;
Zheng, Huisong ;
Lander, Eric S. ;
Altshuler, David L. ;
Ambrogio, Lauren ;
Bloom, Toby ;
Cibulskis, Kristian ;
Fennell, Tim J. ;
Gabriel, Stacey B. .
NATURE, 2010, 467 (7319) :1061-1073
[5]   The Pleiotropic Effect of Physical Exercise on Mitochondrial Dynamics in Aging Skeletal Muscle [J].
Barbieri, Elena ;
Agostini, Deborah ;
Polidori, Emanuela ;
Potenza, Lucia ;
Guescini, Michele ;
Lucertini, Francesco ;
Annibalini, Giosue ;
Stocchi, Laura ;
De Santi, Mauro ;
Stocchi, Vilberto .
OXIDATIVE MEDICINE AND CELLULAR LONGEVITY, 2015, 2015
[6]   Highly interconnected genes in disease-specific networks are enriched for disease-associated polymorphisms [J].
Barrenas, Fredrik ;
Chavali, Sreenivas ;
Alves, Alexessander Couto ;
Coin, Lachlan ;
Jarvelin, Marjo-Riitta ;
Jornsten, Rebecka ;
Langston, Michael A. ;
Ramasamy, Adaikalavan ;
Rogers, Gary ;
Wang, Hui ;
Benson, Mikael .
GENOME BIOLOGY, 2012, 13 (06)
[7]   Sarcopenia Definition: The Position Statements of the Sarcopenia Definition and Outcomes Consortium [J].
Bhasin, Shalender ;
Travison, Thomas G. ;
Manini, Todd M. ;
Patel, Sheena ;
Pencina, Karol M. ;
Fielding, Roger A. ;
Magaziner, Jay M. ;
Newman, Anne B. ;
Kiel, Douglas P. ;
Cooper, Cyrus ;
Guralnik, Jack M. ;
Cauley, Jane A. ;
Arai, Hidenori ;
Clark, Brian C. ;
Landi, Francesco ;
Schaap, Laura A. ;
Pereira, Suzette L. ;
Rooks, Daniel ;
Woo, Jean ;
Woodhouse, Linda J. ;
Binder, Ellen ;
Brown, Todd ;
Shardell, Michelle ;
Xue, Quian-Li ;
D'Agostino, Ralph B., Sr. ;
Orwig, Denise ;
Gorsicki, Greg ;
Correa-De-Araujo, Rosaly ;
Cawthon, Peggy M. .
JOURNAL OF THE AMERICAN GERIATRICS SOCIETY, 2020, 68 (07) :1410-1418
[8]   Exercise rejuvenates quiescent skeletal muscle stem cells in old mice through restoration of Cyclin D1 [J].
Brett, Jamie O. ;
Arjona, Marina ;
Ikeda, Mika ;
Quarta, Marco ;
de Morree, Antoine ;
Egner, Ingrid M. ;
Perandini, Luiz A. ;
Ishak, Heather D. ;
Goshayeshi, Armon ;
Benjamin, Daniel I. ;
Both, Pieter ;
Rodriguez-Mateo, Cristina ;
Betley, Michael J. ;
Wyss-Coray, Tony ;
Rando, Thomas A. .
NATURE METABOLISM, 2020, 2 (04) :307-+
[9]   Appendicular lean mass and mortality among prefrail and frail older adults [J].
Brown, J. C. ;
Harhay, M. O. ;
Harhay, M. N. .
JOURNAL OF NUTRITION HEALTH & AGING, 2017, 21 (03) :342-345
[10]   Role of microRNA in muscle regeneration and diseases related to muscle dysfunction in atrophy, cachexia, osteoporosis, and osteoarthritis [J].
Brzeszczynska, J. ;
Brzeszczynski, F. ;
Hamilton, D. F. ;
McGregor, R. ;
Simpson, A. H. R. W. .
BONE & JOINT RESEARCH, 2020, 9 (11) :798-807