A first look at the genome structure of hexaploid "Mitcham" peppermint (Mentha x piperita L.)

被引：0
作者：
Talbot, Samuel C. [1 ]
Pandelova, Iovanna [1 ]
Lange, Bernd Markus [2 ,3 ]
Vining, Kelly J. [1 ]
机构：
[1] Oregon State Univ, Dept Hort, 4017 Agr & Life Sci Bldg, Corvallis, OR 97331 USA
[2] Washington State Univ, Inst Biol Chem, Pullman, WA 99164 USA
[3] Washington State Univ, MJ Murdock Metabol Lab, Pullman, WA 99164 USA
来源：
G3-GENES GENOMES GENETICS | 2024年 / 14卷 / 12期
关键词：
Lamiaceae; Mentha; mint; peppermint; hexaploid; monoterpene; EFFICIENT; ANNOTATION; ALIGNMENT; ACCURATE; FINDER; TOOL;
D O I：
10.1093/g3journal/jkae195
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
Peppermint, Mentha x piperita L., is a hexaploid (2n = 6x = 72) and the predominant cultivar of commercial mint oil production in the US. This cultivar is threatened because of high susceptibility to the fungal disease verticillium wilt, caused by Verticillium dahliae. This report details the first draft polyploid chromosome-level genome assembly for this mint species. The "Mitcham" genome resource will broaden comparative studies of disease resistance, essential oil biosynthesis, and hybridization events within the genus Mentha. It will also be a valuable contribution to the body of phylogenetic studies involving Mentha and other genera that contain species with varying ploidy levels.
引用
收藏
页数：6
相关论文
共 46 条
  • [1] Multiple Levels of Regulation Determine Monoterpenoid Essential Oil Compositional Variation in the Mint Family
    Ahkami, Amirhossein
    Johnson, Sean R.
    Srividya, Narayanan
    Lange, Bernd Markus
    [J]. MOLECULAR PLANT, 2015, 8 (01) : 188 - 191
  • [2] Helitrons: genomic parasites that generate developmental novelties
    Barro-Trastoy, Daniela
    Koehler, Claudia
    [J]. TRENDS IN GENETICS, 2024, 40 (05) : 437 - 448
  • [3] Phylogenomic Mining of the Mints Reveals Multiple Mechanisms Contributing to the Evolution of Chemical Diversity in Lamiaceae
    Boachon, Benoit
    Buell, C. Robin
    Crisovan, Emily
    Dudareva, Natalia
    Garcia, Nicolas
    Godden, Grant
    Henry, Laura
    Kamileen, Mohamed O.
    Kates, Heather Rose
    Kilgore, Matthew B.
    Lichman, Benjamin R.
    Mavrodiev, Evgeny, V
    Newton, Linsey
    Rodriguez-Lopez, Carlos
    O'Connor, Sarah E.
    Soltis, Douglas
    Soltis, Pamela
    Vaillancourt, Brieanne
    Wiegert-Rininger, Krystle
    Zhao, Dongyan
    [J]. MOLECULAR PLANT, 2018, 11 (08) : 1084 - 1096
  • [4] Bruna T, 2024, bioRxiv, DOI [10.1101/2023.01.13.524024, 10.1101/2023.01.13.524024, DOI 10.1101/2023.01.13.524024], Patent No. 524024
  • [5] Fast and sensitive protein alignment using DIAMOND
    Buchfink, Benjamin
    Xie, Chao
    Huson, Daniel H.
    [J]. NATURE METHODS, 2015, 12 (01) : 59 - 60
  • [6] Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
    Cheng, Haoyu
    Concepcion, Gregory T.
    Feng, Xiaowen
    Zhang, Haowen
    Li, Heng
    [J]. NATURE METHODS, 2021, 18 (02) : 170 - +
  • [7] Origin and evolution of the octoploid strawberry genome
    Edger, Patrick P.
    Poorten, Thomasj
    VanBuren, Robert
    Hardigan, Michael A.
    Colle, Marivi
    McKain, Michael R.
    Smith, Ronald D.
    Teresi, Scottj
    Nelson, Andrew D. L.
    Wai, Ching Man
    Alger, Elizabeth, I
    Bird, Kevin A.
    Yocca, Alan E.
    Pumplin, Nathan
    Ou, Shujun
    Ben-Zvi, Gil
    Brode, Avital
    Baruch, Kobi
    Swale, Thomas
    Shiue, Lily
    Acharya, Charlotte B.
    Cole, Glenn S.
    Mower, Jeffrey P.
    Childs, Kevin L.
    Jiang, Ning
    Lyons, Eric
    Freeling, Michael
    Puzey, Joshua R.
    Knapp, Steven J.
    [J]. NATURE GENETICS, 2019, 51 (03) : 541 - +
  • [8] OrthoFinder: phylogenetic orthology inference for comparative genomics
    Emms, David M.
    Kelly, Steven
    [J]. GENOME BIOLOGY, 2019, 20 (01)
  • [9] TSEBRA: transcript selector for BRAKER
    Gabriel, Lars
    Hoff, Katharina J.
    Bruna, Tomas
    Borodovsky, Mark
    Stanke, Mario
    [J]. BMC BIOINFORMATICS, 2021, 22 (01)
  • [10] Heterogeneity of three molecular data partition phylogenies of mints related to M. x piperita (Mentha; Lamiaceae)
    Gobert, V.
    Moja, S.
    Taberlet, P.
    Wink, M.
    [J]. PLANT BIOLOGY, 2006, 8 (04) : 470 - 485
12345