Backbone resonance assignments of the C-terminal thioesterase domain of tyrocidine synthetase C

被引:0
作者
Takeda, Mitsuhiro [1 ]
Saito, Rino [1 ]
Konno, Sho [2 ]
Nagae, Takayuki [1 ]
Aoyama, Hiroshi [1 ]
Yoshinaga, Sosuke [3 ]
Terasawa, Hiroaki [3 ]
Taguchi, Akihiro [2 ]
Taniguchi, Atsuhiko [2 ]
Hayashi, Yoshio [2 ]
Mishima, Masaki [1 ]
机构
[1] Tokyo Univ Pharm & Life Sci, Sch Pharm, Dept Mol Biophys, Tokyo, Japan
[2] Tokyo Univ Pharm & Life Sci, Sch Pharm, Dept Med Chem, Tokyo, Japan
[3] Kumamoto Univ, Fac Life Sci, Dept Struct BioImaging, Kumamoto, Japan
关键词
Nonribosomal peptide synthetase; Tyrocidine; Secondary structure prediction; Thioesterase domain;
D O I
10.1007/s12104-024-10210-5
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Natural macrocyclic peptides produced by microorganisms serve as valuable resources for therapeutic compounds, including antibiotics, anticancer agents, and immune suppressive agents. Nonribosomal peptide synthetases (NRPSs) are responsible for the biosynthesis of macrocyclic peptides. NRPSs are large multimodular enzymes, and each module recognizes and incorporates one specific amino acid into the polypeptide product. In the final biosynthetic step, the mature linear peptide precursor is subject to head-to-tail cyclization by the thioesterase (TE) domain in the C-terminal module. Since the TE domains can autonomously catalyze the cyclization of diverse linear peptide substrates, isolated TE domains can be used to produce natural product derivatives. To understand the mechanism of TE domains in NRPSs as a base for therapeutic applications, we investigated the TE domain (residues 6236-6486) of tyrocidine synthetase TycC by NMR. Tyrocidine is a cyclic decapeptide with antibiotic activity, and TycC-TE catalyzes the cyclization of the linear decapeptide precursor. Here, we report the backbone resonance assignments of TycC-TE. The assignments of TycC-TE provide the basis for NMR investigations of the structure and substrate-recognition mode of the TE domain in NRPS.
引用
收藏
页码:17 / 21
页数:5
相关论文
共 16 条
  • [1] Biosynthesis of nonribosomal peptides
    Finking, R
    Marahiel, MA
    [J]. ANNUAL REVIEW OF MICROBIOLOGY, 2004, 58 : 453 - 488
  • [2] Solution structure of the 30 kDa N-terminal domain of enzyme I of the Escherichia coli phosphoenolpyruvate:sugar phosphotransferase system by multidimensional NMR
    Garrett, DS
    Seok, YJ
    Liao, DI
    Peterkofsky, A
    Gronenborn, AM
    Clore, GM
    [J]. BIOCHEMISTRY, 1997, 36 (09) : 2517 - 2530
  • [3] CSI 3.0: a web server for identifying secondary and super-secondary structure in proteins using NMR chemical shifts
    Hafsa, Noor E.
    Arndt, David
    Wishart, David S.
    [J]. NUCLEIC ACIDS RESEARCH, 2015, 43 (W1) : W370 - W377
  • [4] Explorations of catalytic domains in non-ribosomal peptide synthetase enzymology
    Hur, Gene H.
    Vickery, Christopher R.
    Burkart, Michael D.
    [J]. NATURAL PRODUCT REPORTS, 2012, 29 (10) : 1074 - 1098
  • [5] Highly accurate protein structure prediction with AlphaFold
    Jumper, John
    Evans, Richard
    Pritzel, Alexander
    Green, Tim
    Figurnov, Michael
    Ronneberger, Olaf
    Tunyasuvunakool, Kathryn
    Bates, Russ
    Zidek, Augustin
    Potapenko, Anna
    Bridgland, Alex
    Meyer, Clemens
    Kohl, Simon A. A.
    Ballard, Andrew J.
    Cowie, Andrew
    Romera-Paredes, Bernardino
    Nikolov, Stanislav
    Jain, Rishub
    Adler, Jonas
    Back, Trevor
    Petersen, Stig
    Reiman, David
    Clancy, Ellen
    Zielinski, Michal
    Steinegger, Martin
    Pacholska, Michalina
    Berghammer, Tamas
    Bodenstein, Sebastian
    Silver, David
    Vinyals, Oriol
    Senior, Andrew W.
    Kavukcuoglu, Koray
    Kohli, Pushmeet
    Hassabis, Demis
    [J]. NATURE, 2021, 596 (7873) : 583 - +
  • [6] Cyclic depsipeptides as potential cancer therapeutics
    Kitagaki, Jirouta
    Shi, Genbin
    Miyauchi, Shizuka
    Murakami, Shinya
    Yang, Yili
    [J]. ANTI-CANCER DRUGS, 2015, 26 (03) : 259 - 271
  • [7] NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy
    Lee, Woonghee
    Tonelli, Marco
    Markley, John L.
    [J]. BIOINFORMATICS, 2015, 31 (08) : 1325 - 1327
  • [8] Atomic-resolution structure of HIV-1 capsid tubes by magic-angle spinning NMR
    Lu, Manman
    Russell, Ryan W.
    Bryer, Alexander J.
    Quinn, Caitlin M.
    Hou, Guangjin
    Zhang, Huilan
    Schwieters, Charles D.
    Perilla, Juan R.
    Gronenborn, Angela M.
    Polenova, Tatyana
    [J]. NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2020, 27 (09) : 863 - +
  • [9] Mechanisms of action of cyclosporine
    Matsuda, S
    Koyasu, S
    [J]. IMMUNOPHARMACOLOGY, 2000, 47 (2-3): : 119 - 125
  • [10] α/β hydrolase fold enzymes:: the family keeps growing
    Nardini, M
    Dijkstra, BW
    [J]. CURRENT OPINION IN STRUCTURAL BIOLOGY, 1999, 9 (06) : 732 - 737