Epigenetic Regulation of Chromatin Functions by MicroRNAs and Long Noncoding RNAs and Implications in Human Diseases

被引:1
作者
Costa, Salvatore [1 ]
La Rocca, Gaspare [1 ]
Cavalieri, Vincenzo [1 ]
机构
[1] Univ Palermo, Dept Biol Chem & Pharmaceut Sci & Technol STEBICEF, Viale Sci Bld 16, I-90128 Palermo, Italy
关键词
miRNA; long noncoding RNA; circular RNA; histone modifiers; epigenetics; chromatin; disease; TRANSCRIPTIONAL REGULATION; TUMOR-SUPPRESSOR; SKELETAL-MUSCLE; BREAST-CANCER; CIRCULAR RNAS; ENHANCER; GENES; MECHANISMS; OVEREXPRESSION; IDENTIFICATION;
D O I
10.3390/biomedicines13030725
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The bulk of RNA produced from the genome of complex organisms consists of a very large number of transcripts lacking protein translational potential and collectively known as noncoding RNAs (ncRNAs). Initially thought to be mere products of spurious transcriptional noise, ncRNAs are now universally recognized as pivotal players in cell regulatory networks across a broad spectrum of biological processes. Owing to their critical regulatory roles, ncRNA dysfunction is closely associated with the etiopathogenesis of various human malignancies, including cancer. As such, ncRNAs represent valuable diagnostic biomarkers as well as potential targets for innovative therapeutic intervention. In this review, we focus on microRNAs (miRNAs) and long noncoding RNAs (lncRNAs), the two most extensively studied classes in the field of ncRNA biology. After outlining key concepts of miRNA and lncRNA biogenesis pathways, we examine their multiple roles in mediating epigenetic regulation of gene expression and chromatin organization. Finally, by providing numerous examples of specific miRNAs and lncRNAs, we discuss how dysregulation of these mechanisms contributes to the onset and/or progression of various human diseases.
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页数:16
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共 134 条
[1]   miRNA-132 orchestrates chromatin remodeling and translational control of the circadian clock [J].
Alvarez-Saavedra, Matias ;
Antoun, Ghadi ;
Yanagiya, Akiko ;
Oliva-Hernandez, Reynaldo ;
Cornejo-Palma, Daniel ;
Perez-Iratxeta, Carolina ;
Sonenberg, Nahum ;
Cheng, Hai-Ying M. .
HUMAN MOLECULAR GENETICS, 2011, 20 (04) :731-751
[2]   The status of the human gene catalogue [J].
Amaral, Paulo ;
Carbonell-Sala, Silvia ;
De La Vega, Francisco M. ;
Faial, Tiago ;
Frankish, Adam ;
Gingeras, Thomas ;
Guigo, Roderic ;
Harrow, Jennifer L. ;
Hatzigeorgiou, Artemis G. ;
Johnson, Rory ;
Murphy, Terence D. ;
Pertea, Mihaela ;
Pruitt, Kim D. ;
Pujar, Shashikant ;
Takahashi, Hazuki ;
Ulitsky, Igor ;
Varabyou, Ales ;
Wells, Christine A. ;
Yandell, Mark ;
Carninci, Piero ;
Salzberg, Steven L. .
NATURE, 2023, 622 (7981) :41-47
[3]   The FibromiR miR-214-3p Is Upregulated in Duchenne Muscular Dystrophy and Promotes Differentiation of Human Fibro-Adipogenic Muscle Progenitors [J].
Arrighi, Nicole ;
Moratal, Claudine ;
Savary, Gregoire ;
Fassy, Julien ;
Nottet, Nicolas ;
Pons, Nicolas ;
Clement, Noemie ;
Fellah, Sandy ;
Larrue, Romain ;
Magnone, Virginie ;
Lebrigand, Kevin ;
Pottier, Nicolas ;
Dechesne, Claude ;
Vassaux, Georges ;
Dani, Christian ;
Peraldi, Pascal ;
Mari, Bernard .
CELLS, 2021, 10 (07)
[4]   Therapeutic Targeting of Long Non-Coding RNAs in Cancer [J].
Arun, Gayatri ;
Diermeier, Sarah D. ;
Spector, David L. .
TRENDS IN MOLECULAR MEDICINE, 2018, 24 (03) :257-277
[5]   miR-132 couples the circadian clock to daily rhythms of neuronal plasticity and cognition [J].
Aten, Sydney ;
Hansen, Katelin F. ;
Snider, Kaitlin ;
Wheaton, Kelin ;
Kalidindi, Anisha ;
Garcia, Ashley ;
Alzate-Correa, Diego ;
Hoyt, Kari R. ;
Obrietan, Karl .
LEARNING & MEMORY, 2018, 25 (05) :214-229
[6]   MicroRNA 195-5p Targets Foxo3 Promoter Region to Regulate Its Expression in Granulosa Cells [J].
Bai, Yinshan ;
Pan, Bo ;
Zhan, Xiaoshu ;
Silver, Hailey ;
Li, Julang .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2021, 22 (13)
[7]   Metazoan MicroRNAs [J].
Bartel, David P. .
CELL, 2018, 173 (01) :20-51
[8]   MicroRNAs: Target Recognition and Regulatory Functions [J].
Bartel, David P. .
CELL, 2009, 136 (02) :215-233
[9]   MicroRNAs: Genomics, biogenesis, mechanism, and function (Reprinted from Cell, vol 116, pg 281-297, 2004) [J].
Bartel, David P. .
CELL, 2007, 131 (04) :11-29
[10]   An operational definition of epigenetics [J].
Berger, Shelley L. ;
Kouzarides, Tony ;
Shiekhattar, Ramin ;
Shilatifard, Ali .
GENES & DEVELOPMENT, 2009, 23 (07) :781-783