Development and characterization of polymorphic microsatellite markers for Periplaneta americana (Blattodea: Blattidae)

被引:0
作者
Lim, Li [1 ]
Ab Majid, Abdul Hafiz [1 ]
机构
[1] Univ Sains Malaysia, Sch Biol Sci, Vector Control Res Unit, Household & Struct Urban Entomol Lab, Minden 11800, Penang, Malaysia
关键词
microsatellite; American cockroach; marker; next-generation sequencing; SELECTION; SOFTWARE; ERRORS;
D O I
10.1093/jisesa/ieae096
中图分类号
Q96 [昆虫学];
学科分类号
摘要
The American cockroach, Periplaneta americana (Blattodea: Blattidae), is a prevalent urban pest with significant public health implications. This study aimed to develop and validate novel microsatellite markers to understand the genetic diversity and population genetic structure of P. americana. In this study, a total of 397,898 microsatellite markers were developed based on 24.6 million genomic DNA sequences. Twenty microsatellite markers were selected and amplified with varying numbers of alleles ranging from 0 to 35. Seven out of 20 markers were characterized for their polymorphism and amplification efficiency. The polymorphic information content (PIC) values of these markers were high (0.669 to 0.950) implying their effectiveness. These markers also revealed 7 to 35 alleles per locus across tested samples, highlighting their utility in assessing the extensive genetic variation within Periplaneta americana populations. These results provide insightful information that may be applied to the genetic analysis of the American cockroach population using the developed species-specific microsatellite marker.
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页数:4
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共 21 条
  • [1] Genetic evidence that both dNTP-stabilized and strand slippage mechanisms may dictate DNA polymerase errors within mononucleotide microsatellites
    Baptiste, Beverly A.
    Jacob, Kimberly D.
    Eckert, Kristin A.
    [J]. DNA REPAIR, 2015, 29 : 91 - 100
  • [2] Mutational Dynamics of Microsatellites
    Bhargava, Atul
    Fuentes, F. F.
    [J]. MOLECULAR BIOTECHNOLOGY, 2010, 44 (03) : 250 - 266
  • [3] BOTSTEIN D, 1980, AM J HUM GENET, V32, P314
  • [4] MICROSATELLITES AND THEIR APPLICATION TO POPULATION GENETIC-STUDIES
    BRUFORD, MW
    WAYNE, RK
    [J]. CURRENT OPINION IN GENETICS & DEVELOPMENT, 1993, 3 (06) : 939 - 943
  • [5] The rise, fall and renaissance of microsatellites in eukaryotic genomes
    Buschiazzo, Emmanuel
    Gemmell, Neil J.
    [J]. BIOESSAYS, 2006, 28 (10) : 1040 - 1050
  • [6] De novo Assembly and Characterization of the Testis Transcriptome and Development of EST-SSR Markers in the Cockroach Periplaneta americana
    Chen, Wan
    Liu, Yu-Xiang
    Jiang, Guo-Fang
    [J]. SCIENTIFIC REPORTS, 2015, 5
  • [7] Garnier-Gr P., 2013, Els
  • [8] Hedrick PW., 2016, Encyclopedia of evolutionary biology, P249
  • [9] Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment
    Kalinowski, Steven T.
    Taper, Mark L.
    Marshall, Tristan C.
    [J]. MOLECULAR ECOLOGY, 2007, 16 (05) : 1099 - 1106
  • [10] The genomic and functional landscapes of developmental plasticity in the American cockroach
    Li, Sheng
    Zhu, Shiming
    Jia, Qiangqiang
    Yuan, Dongwei
    Ren, Chonghua
    Li, Kang
    Liu, Suning
    Cui, Yingying
    Zhao, Haigang
    Cao, Yanghui
    Fang, Gangqi
    Li, Daqi
    Zhao, Xiaoming
    Zhang, Jianzhen
    Yue, Qiaoyun
    Fan, Yongliang
    Yu, Xiaoqiang
    Feng, Qili
    Zhan, Shuai
    [J]. NATURE COMMUNICATIONS, 2018, 9