Genetic and epigenetic alterations in aging and rejuvenation of human

被引:8
作者
Park, Kyunghyuk [1 ]
Jeon, Min Chul [2 ]
Lee, Dakyung [2 ]
Kim, Jong-Il [1 ,2 ,3 ]
Im, Sun-Wha [4 ]
机构
[1] Seoul Natl Univ, Genom Med Inst, Med Res Ctr, Seoul, South Korea
[2] Seoul Natl Univ, Dept Biomed Sci, Coll Med, Seoul, South Korea
[3] Seoul Natl Univ, Coll Med, Dept Biochem & Mol Biol, Seoul, South Korea
[4] Kangwon Natl Univ, Dept Biochem & Mol Biol, Sch Med, Chunchon, Gangwon, South Korea
关键词
Aging; Cell differentiation; Epigenetics; Rejuvenation; Stem cell; SOMATIC MUTATIONS; DNA METHYLATION; STEM-CELLS; CLONAL HEMATOPOIESIS; CALORIC RESTRICTION; LIFE-SPAN; CHROMATIN; DIFFERENTIATION; EXPRESSION; LANDSCAPE;
D O I
10.1016/j.mocell.2024.100137
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
All the information essential for life is encoded within our genome and epigenome, which orchestrates diverse cellular states spatially and temporally. In particular, the epigenome interacts with internal and external stimuli, encoding and preserving cellular experiences, and it serves as the regulatory base of the transcriptome across diverse cell types. The emergence of single-cell transcriptomic and epigenomic data collection has revealed unique omics signatures in diverse tissues, highlighting cellular heterogeneity. Recent research has documented age-related epigenetic changes at the singlecell level, alongside the validation of cellular rejuvenation through partial reprogramming, which involves simultaneous epigenetic modifications. These dynamic shifts, primarily fueled by stem cell plasticity, have catalyzed significant interest and cross-disciplinary research endeavors. This review explores the genomic and epigenomic alterations with aging, elucidating their reciprocal interactions. Additionally, it seeks to discuss the evolving landscape of rejuvenation research, with a particular emphasis on dissecting stem cell behavior through the lens of single-cell analysis. Moreover, it proposes potential research methodologies for future studies. (c) 2024 Published by Elsevier Inc. on behalf of Korean Society for Molecular and Cellular Biology. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
引用
收藏
页数:19
相关论文
共 216 条
[1]   Reprogramming in vivo produces teratomas and iPS cells with totipotency features [J].
Abad, Maria ;
Mosteiro, Lluc ;
Pantoja, Cristina ;
Canamero, Marta ;
Rayon, Teresa ;
Ors, Inmaculada ;
Grana, Osvaldo ;
Megias, Diego ;
Dominguez, Orlando ;
Martinez, Dolores ;
Manzanares, Miguel ;
Ortega, Sagrario ;
Serrano, Manuel .
NATURE, 2013, 502 (7471) :340-+
[2]   Circadian alignment of early onset caloric restriction promotes longevity in male C57BL/6J mice [J].
Acosta-Rodriguez, Victoria ;
Rijo-Ferreira, Filipa ;
Izumo, Mariko ;
Xu, Pin ;
Wight-Carter, Mary ;
Green, Carla B. ;
Takahashi, Joseph S. .
SCIENCE, 2022, 376 (6598) :1192-+
[3]   The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain [J].
Ament, Seth A. ;
Adkins, Ricky S. ;
Carter, Robert ;
Chrysostomou, Elena ;
Colantuoni, Carlo ;
Crabtree, Jonathan ;
Creasy, Heather H. ;
Degatano, Kylee ;
Felix, Victor ;
Gandt, Peter ;
Garden, Gwenn A. ;
Giglio, Michelle ;
Herb, Brian R. ;
Khajouei, Farzaneh ;
Kiernan, Elizabeth ;
McCracken, Carrie ;
McDaniel, Kennedy ;
Nadendla, Suvarna ;
Nickel, Lance ;
Olley, Dustin ;
Orvis, Joshua ;
Receveur, Joseph P. ;
Schor, Mike ;
Sonthalia, Shreyash ;
Tickle, Timothy L. ;
Way, Jessica ;
Hertzano, Ronna ;
Mahurkar, Anup A. ;
White, Owen R. .
NUCLEIC ACIDS RESEARCH, 2023, 51 (D1) :D1075-D1085
[4]   Multi-omics profiling of mouse gastrulation at single-cell resolution [J].
Argelaguet, Ricard ;
Clark, Stephen J. ;
Mohammed, Hisham ;
Stapel, L. Carine ;
Krueger, Christel ;
Kapourani, Chantriolnt-Andreas ;
Imaz-Rosshandler, Ivan ;
Lohoff, Tim ;
Xiang, Yunlong ;
Hanna, Courtney W. ;
Smallwood, Sebastien ;
Ibarra-Soria, Ximena ;
Buettner, Florian ;
Sanguinetti, Guido ;
Xie, Wei ;
Krueger, Felix ;
Gottgens, Berthold ;
Rugg-Gunn, Peter J. ;
Kelsey, Gavin ;
Dean, Wendy ;
Nichols, Jennifer ;
Stegle, Oliver ;
Marioni, John C. ;
Reik, Wolf .
NATURE, 2019, 576 (7787) :487-+
[5]   Fast and efficient generation of knock-in human organoids using homology-independent CRISPR-Cas9 precision genome editing [J].
Artegiani, Benedetta ;
Hendriks, Delilah ;
Beumer, Joep ;
Kok, Rutger ;
Zheng, Xuan ;
Joore, Indi ;
Chuva de Sousa Lopes, Susana ;
van Zon, Jeroen ;
Tans, Sander ;
Clevers, Hans .
NATURE CELL BIOLOGY, 2020, 22 (03) :321-+
[6]   Abnormal RNA splicing and genomic instability after induction of DNMT3A mutations by CRISPR/Cas9 gene editing [J].
Banaszak, Lauren G. ;
Giudice, Valentina ;
Zhao, Xin ;
Wu, Zhijie ;
Gao, Shouguo ;
Hosokawa, Kohei ;
Keyvanfar, Keyvan ;
Townsley, Danielle M. ;
Gutierrez-Rodrigues, Fernanda ;
Ibanez, Maria del Pilar Fernandez ;
Kajigaya, Sachiko ;
Young, Neal S. .
BLOOD CELLS MOLECULES AND DISEASES, 2018, 69 :10-22
[7]   Regulation of chromatin by histone modifications [J].
Bannister, Andrew J. ;
Kouzarides, Tony .
CELL RESEARCH, 2011, 21 (03) :381-395
[8]   Healthspan and lifespan extension by fecal microbiota transplantation into progeroid mice [J].
Barcena, Clea ;
Valdes-Mas, Rafael ;
Mayoral, Pablo ;
Garabaya, Cecilia ;
Durand, Sylvere ;
Rodriguez, Francisco ;
Teresa Fernandez-Garcia, Maria ;
Salazar, Nuria ;
Nogacka, Alicja M. ;
Garatachea, Nuria ;
Bossut, Noelie ;
Aprahamian, Fanny ;
Lucia, Alejandro ;
Kroemer, Guido ;
Freije, Jose M. P. ;
Quiros, Pedro M. ;
Lopez-Otin, Carlos .
NATURE MEDICINE, 2019, 25 (08) :1234-+
[9]   Multimodal chromatin profiling using nanobody-based single-cell CUT&Tag [J].
Bartosovic, Marek ;
Castelo-Branco, Goncalo .
NATURE BIOTECHNOLOGY, 2023, 41 (06) :794-+
[10]   Single-cell CUT&Tag profiles histone modifications and transcription factors in complex tissues [J].
Bartosovic, Marek ;
Kabbe, Mukund ;
Castelo-Branco, Goncalo .
NATURE BIOTECHNOLOGY, 2021, 39 (07) :825-835