Mapping snoRNA Targets Transcriptome-Wide with snoKARR-seq

被引:0
|
作者
Liu, Bei [1 ]
机构
[1] Univ Chicago, Dept Chem, Chicago, IL 60637 USA
基金
美国国家卫生研究院;
关键词
RNAS;
D O I
10.1021/acschembio.4c00813
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Small nucleolar RNAs (snoRNAs) are noncoding RNAs primarily known for guiding chemical modifications of RNA, but their broader cellular roles and contributions to human diseases remain elusive. This In Focus article introduces the development of snoRNA-enriched kethoxal-assisted RNA-RNA sequencing (snoKARR-seq), a transcriptome-wide approach to uncover snoRNA targets with enhanced sensitivity and specificity. This method revealed an unexpected role for snoRNAs in protein translocation and secretion, expanding our understanding of their noncanonical functions.
引用
收藏
页码:242 / 244
页数:3
相关论文
共 50 条
  • [1] Keth-seq for transcriptome-wide RNA structure mapping
    Weng, Xiaocheng
    Gong, Jing
    Chen, Yi
    Wu, Tong
    Wang, Fang
    Yang, Shixi
    Yuan, Yushu
    Luo, Guanzheng
    Chen, Kai
    Hu, Lulu
    Ma, Honghui
    Wang, Pingluan
    Zhang, Qiangfeng Cliff
    Zhou, Xiang
    He, Chuan
    NATURE CHEMICAL BIOLOGY, 2020, 16 (05) : 489 - +
  • [2] Keth-seq for transcriptome-wide RNA structure mapping
    Xiaocheng Weng
    Jing Gong
    Yi Chen
    Tong Wu
    Fang Wang
    Shixi Yang
    Yushu Yuan
    Guanzheng Luo
    Kai Chen
    Lulu Hu
    Honghui Ma
    Pingluan Wang
    Qiangfeng Cliff Zhang
    Xiang Zhou
    Chuan He
    Nature Chemical Biology, 2020, 16 : 489 - 492
  • [3] snoRNA-facilitated protein secretion revealed by transcriptome-wide snoRNA target identification
    Liu, Bei
    Wu, Tong
    Miao, Bernadette A.
    Ji, Fei
    Liu, Shun
    Wang, Pingluan
    Zhao, Yutao
    Zhong, Yuhao
    Sundaram, Arunkumar
    Zeng, Tie-Bo
    Majcherska-Agrawal, Marta
    Keenan, Robert J.
    Pan, Tao
    He, Chuan
    CELL, 2025, 188 (02)
  • [4] Transcriptome-wide Analysis of Exosome Targets
    Schneider, Claudia
    Kudla, Grzegorz
    Wlotzka, Wiebke
    Tuck, Alex
    Tollervey, David
    MOLECULAR CELL, 2012, 48 (03) : 422 - 433
  • [5] Transcriptome-Wide Mapping of N6-Methyladenosine by m6A-Seq
    Dominissini, Dan
    Moshitch-Moshkovitz, Sharon
    Amariglio, Ninette
    Rechavi, Gideon
    RNA MODIFICATION, 2015, 560 : 131 - 147
  • [6] Transcriptome-wide identification of microRNA targets in rice
    Li, Yong-Fang
    Zheng, Yun
    Addo-Quaye, Charles
    Zhang, Li
    Saini, Ajay
    Jagadeeswaran, Guru
    Axtell, Michael J.
    Zhang, Weixiong
    Sunkar, Ramanjulu
    PLANT JOURNAL, 2010, 62 (05): : 742 - 759
  • [7] Transcriptome-Wide Identification of miRNAs and Their Targets from Typha angustifolia by RNA-Seq and Their Response to Cadmium Stress
    Xu, Yingchun
    Chu, Lingling
    Jin, Qijiang
    Wang, Yanjie
    Chen, Xian
    Zhao, Hui
    Xue, Zeyun
    PLOS ONE, 2015, 10 (04):
  • [8] Transcriptome-wide identification of RNA binding sites by CLIP-seq
    Murigneux, Valentine
    Sauliere, Jerome
    Roest Crollius, Hugues
    Le Hir, Helve
    METHODS, 2013, 63 (01) : 32 - 40
  • [9] Updated Pseudo-seq Protocol for Transcriptome-Wide Detection of Pseudouridines
    Pan, Yi
    Adachi, Hironori
    He, Xueyang
    Chen, Jonathan L.
    Yu, Yi-Tao
    Boutz, Paul L.
    BIO-PROTOCOL, 2024, 14 (09):
  • [10] Transcriptome-wide organization of subcellular microenvironments revealed by ATLAS-Seq
    Adekunle, Danielle A.
    Wang, Eric T.
    NUCLEIC ACIDS RESEARCH, 2020, 48 (11) : 5859 - 5872