The exchange dynamics of biomolecular condensates

被引:9
作者
Zhang, Yaojun [1 ,2 ,3 ]
Pyo, Andrew G. T. [4 ]
Kliegman, Ross [2 ]
Jiang, Yoyo [2 ]
Brangwynne, Clifford P. [5 ,6 ]
Stone, Howard A. [7 ]
Wingreen, Ned S. [8 ,9 ]
机构
[1] Princeton Univ, Ctr Phys Biol Funct, Princeton, NJ 08544 USA
[2] Johns Hopkins Univ, Dept Phys & Astron, Baltimore, MD 21218 USA
[3] Johns Hopkins Univ, Dept Biophys, Baltimore, MD 21218 USA
[4] Princeton Univ, Dept Phys, Princeton, NJ 08544 USA
[5] Princeton Univ, Dept Chem & Biol Engn, Princeton, NJ USA
[6] Howard Hughes Med Inst, Chevy Chase, MD USA
[7] Princeton Univ, Dept Mech & Aerosp Engn, Princeton, NJ USA
[8] Princeton Univ, Dept Mol Biol, Princeton, NJ 21218 USA
[9] Lewis Sigler Inst Integrat Genom, Princeton, NJ 08540 USA
基金
美国国家科学基金会;
关键词
biomolecular condensates; exchange dynamics; interface resistance; GRANULES;
D O I
10.7554/eLife.91680
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
A hallmark of biomolecular condensates formed via liquid-liquid phase separation is that they dynamically exchange material with their surroundings, and this process can be crucial to condensate function. Intuitively, the rate of exchange can be limited by the flux from the dilute phase or by the mixing speed in the dense phase. Surprisingly, a recent experiment suggests that exchange can also be limited by the dynamics at the droplet interface, implying the existence of an 'interface resistance'. Here, we first derive an analytical expression for the timescale of condensate material exchange, which clearly conveys the physical factors controlling exchange dynamics. We then utilize sticker-spacer polymer models to show that interface resistance can arise when incident molecules transiently touch the interface without entering the dense phase, i.e., the molecules 'bounce' from the interface. Our work provides insight into condensate exchange dynamics, with implications for both natural and synthetic systems.
引用
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页数:28
相关论文
共 36 条
[21]   A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation [J].
Patel, Avinash ;
Lee, Hyun O. ;
Jawerth, Louise ;
Maharana, Shovamayee ;
Jahnel, Marcus ;
Hein, Marco Y. ;
Stoynov, Stoyno ;
Mahamid, Julia ;
Saha, Shambaditya ;
Franzmann, Titus M. ;
Pozniakovski, Andrej ;
Poser, Ina ;
Maghelli, Nicola ;
Royer, Loic A. ;
Weigert, Martin ;
Myers, Eugene W. ;
Grill, Stephan ;
Drechsel, David ;
Hyman, Anthony A. ;
Alberti, Simon .
CELL, 2015, 162 (05) :1066-1077
[22]   FAST PARALLEL ALGORITHMS FOR SHORT-RANGE MOLECULAR-DYNAMICS [J].
PLIMPTON, S .
JOURNAL OF COMPUTATIONAL PHYSICS, 1995, 117 (01) :1-19
[23]   Dynamic metastable long-living droplets formed by sticker-spacer proteins [J].
Ranganathan, Srivastav ;
Shakhnovich, Eugene, I .
ELIFE, 2020, 9 :1-25
[24]   Mass photometric detection and quantification of nanoscale a-synuclein phase separation [J].
Ray, Soumik ;
Mason, Thomas O. ;
Boyens-Thiele, Lars ;
Farzadfard, Azad ;
Larsen, Jacob Aunstrup ;
Norrild, Rasmus K. ;
Jahnke, Nadin ;
Buell, Alexander K. .
NATURE CHEMISTRY, 2023, 15 (9) :1306-1316
[25]   Stoichiometry Controls the Dynamics of Liquid Condensates of Associative Proteins [J].
Ronceray, Pierre ;
Zhang, Yaojun ;
Liu, Xichong ;
Wingreen, Ned S. .
PHYSICAL REVIEW LETTERS, 2022, 128 (03)
[26]   The Eukaryotic CO2-Concentrating Organelle Is Liquid-like and Exhibits Dynamic Reorganization [J].
Rosenzweig, Elizabeth S. Freeman ;
Xu, Bin ;
Cuellar, Luis Kuhn ;
Martinez-Sanchez, Antonio ;
Schaffer, Miroslava ;
Strauss, Mike ;
Cartwright, Heather N. ;
Ronceray, Pierre ;
Plitzko, Juergen M. ;
Foerster, Friedrich ;
Wingreen, Ned S. ;
Engel, Benjamin D. ;
Mackinder, Luke C. M. ;
Jonikas, Martin C. .
CELL, 2017, 171 (01) :148-+
[27]   Coactivator condensation at super-enhancers links phase separation and gene control [J].
Sabari, Benjamin R. ;
Dall'Agnese, Alessandra ;
Boija, Ann ;
Klein, Isaac A. ;
Coffey, Eliot L. ;
Shrinivas, Krishna ;
Abraham, Brian J. ;
Hannett, Nancy M. ;
Zamudio, Alicia, V ;
Manteiga, John C. ;
Li, Charles H. ;
Guo, Yang E. ;
Day, Daniel S. ;
Schuijers, Jurian ;
Vasile, Eliza ;
Malik, Sohail ;
Hnisz, Denes ;
Lee, Tong Ihn ;
Cisse, Ibrahim I. ;
Roeder, Robert G. ;
Sharp, Phillip A. ;
Chakraborty, Arup K. ;
Young, Richard A. .
SCIENCE, 2018, 361 (6400)
[28]   Thermoreversible gelation in solutions of associative polymers. 1. Statics [J].
Semenov, AN ;
Rubinstein, M .
MACROMOLECULES, 1998, 31 (04) :1373-1385
[29]   Liquid phase condensation in cell physiology and disease [J].
Shin, Yongdae ;
Brangwynne, Clifford P. .
SCIENCE, 2017, 357 (6357)
[30]   Phase separation of signaling molecules promotes T cell receptor signal transduction [J].
Su, Xiaolei ;
Ditlev, Jonathon A. ;
Hui, Enfu ;
Xing, Wenmin ;
Banjade, Sudeep ;
Okrut, Julia ;
King, David S. ;
Taunton, Jack ;
Rosen, Michael K. ;
Vale, Ronald D. .
SCIENCE, 2016, 352 (6285) :595-599