The exchange dynamics of biomolecular condensates

被引:8
作者
Zhang, Yaojun [1 ,2 ,3 ]
Pyo, Andrew G. T. [4 ]
Kliegman, Ross [2 ]
Jiang, Yoyo [2 ]
Brangwynne, Clifford P. [5 ,6 ]
Stone, Howard A. [7 ]
Wingreen, Ned S. [8 ,9 ]
机构
[1] Princeton Univ, Ctr Phys Biol Funct, Princeton, NJ 08544 USA
[2] Johns Hopkins Univ, Dept Phys & Astron, Baltimore, MD 21218 USA
[3] Johns Hopkins Univ, Dept Biophys, Baltimore, MD 21218 USA
[4] Princeton Univ, Dept Phys, Princeton, NJ 08544 USA
[5] Princeton Univ, Dept Chem & Biol Engn, Princeton, NJ USA
[6] Howard Hughes Med Inst, Chevy Chase, MD USA
[7] Princeton Univ, Dept Mech & Aerosp Engn, Princeton, NJ USA
[8] Princeton Univ, Dept Mol Biol, Princeton, NJ 21218 USA
[9] Lewis Sigler Inst Integrat Genom, Princeton, NJ 08540 USA
来源
ELIFE | 2024年 / 12卷
基金
美国国家科学基金会;
关键词
biomolecular condensates; exchange dynamics; interface resistance; GRANULES;
D O I
10.7554/eLife.91680
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
A hallmark of biomolecular condensates formed via liquid-liquid phase separation is that they dynamically exchange material with their surroundings, and this process can be crucial to condensate function. Intuitively, the rate of exchange can be limited by the flux from the dilute phase or by the mixing speed in the dense phase. Surprisingly, a recent experiment suggests that exchange can also be limited by the dynamics at the droplet interface, implying the existence of an 'interface resistance'. Here, we first derive an analytical expression for the timescale of condensate material exchange, which clearly conveys the physical factors controlling exchange dynamics. We then utilize sticker-spacer polymer models to show that interface resistance can arise when incident molecules transiently touch the interface without entering the dense phase, i.e., the molecules 'bounce' from the interface. Our work provides insight into condensate exchange dynamics, with implications for both natural and synthetic systems.
引用
收藏
页数:28
相关论文
共 36 条
[1]   Reversible compartmentalization of de novo purine biosynthetic complexes in living cells [J].
An, Songon ;
Kumar, Ravindra ;
Sheets, Erin D. ;
Benkovic, Stephen J. .
SCIENCE, 2008, 320 (5872) :103-106
[2]   RNA-Based Coacervates as a Model for Membraneless Organelles: Formation, Properties, and Interfacial Liposome Assembly [J].
Aumiller, William M., Jr. ;
Cakmak, Fatma Pir ;
Davis, Bradley W. ;
Keating, Christine D. .
LANGMUIR, 2016, 32 (39) :10042-10053
[3]   Biomolecular condensates: organizers of cellular biochemistry [J].
Banani, Salman F. ;
Lee, Hyun O. ;
Hyman, Anthony A. ;
Rosen, Michael K. .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2017, 18 (05) :285-298
[4]   Compositional Control of Phase-Separated Cellular Bodies [J].
Banani, Salman F. ;
Rice, Allyson M. ;
Peeples, William B. ;
Lin, Yuan ;
Jain, Saumya ;
Parker, Roy ;
Rosen, Michael K. .
CELL, 2016, 166 (03) :651-663
[5]   Stochastic dynamics of single molecules across phase boundaries [J].
Bo, Stefano ;
Hubatsch, Lars ;
Bauermann, Jonathan ;
Weber, Christoph A. ;
Juelicher, Frank .
PHYSICAL REVIEW RESEARCH, 2021, 3 (04)
[6]   Dissociating sticker dynamics from chain relaxation in supramolecular polymer networks-The importance of free partner! [J].
Brassinne, J. ;
Cadix, A. ;
Wilson, J. ;
van Ruymbeke, E. .
JOURNAL OF RHEOLOGY, 2017, 61 (06) :1123-1134
[7]   Residue-by-Residue View of In Vitro FUS Granules that Bind the C-Terminal Domain of RNA Polymerase II [J].
Burke, Kathleen A. ;
Janke, Abigail M. ;
Rhine, Christy L. ;
Fawzi, Nicolas L. .
MOLECULAR CELL, 2015, 60 (02) :231-241
[8]   Physical Principles Underlying the Complex Biology of Intracellular Phase Transitions [J].
Choi, Jeong-Mo ;
Holehouse, Alex S. ;
Pappu, Rohit V. .
ANNUAL REVIEW OF BIOPHYSICS, VOL 49, 2020, 2020, 49 :107-133
[9]   Interface of biomolecular condensates modulates redox reactions [J].
Dai, Yifan ;
Chamberlayne, Christian F. ;
Messina, Marco S. ;
Chang, Christopher J. ;
Zare, Richard N. ;
You, Lingchong ;
Chilkoti, Ashutosh .
CHEM, 2023, 9 (06) :1594-1609
[10]   Regulation of biomolecular condensates by interfacial protein clusters [J].
Folkmann, Andrew W. ;
Putnam, Andrea ;
Lee, Chiu Fan ;
Seydoux, Geraldine .
SCIENCE, 2021, 373 (6560) :1218-+