multi-omics;
omics technologies;
biological data;
diagnosis;
data repositories;
data heterogeneity;
HUMAN METABOLOME DATABASE;
PROTEOMICS;
DISEASE;
GENOME;
MICROBIOME;
BIOLOGY;
HMDB;
DNA;
TRANSCRIPTOMICS;
TECHNOLOGIES;
D O I:
10.5604/01.3001.0054.8093
中图分类号:
Q [生物科学];
学科分类号:
07 ;
0710 ;
09 ;
摘要:
Objective: This review aims to provide a comprehensive overview of omics fields - including genomics, epigenomics, transcriptomics, proteomics, metabolomics, single-cell multiomics, microbiomics, and radiomics - and to highlight the significance of integrating these datasets to tackle complex biological questions in systems biology and precision medicine. Methods: The review analyzes current literature across various omics domains, focusing on their individual contributions to cellular functions and their integration challenges. It discusses successful integration examples and addresses issues like data heterogeneity across databases. Results: Omics integration significantly enhances our understanding of biological systems, with each field offering unique insights. Despite challenges with data inconsistencies, successful cases show the potential of integrated omics in advancing personalized medicine, drug discovery, and disease research. Conclusions: Advancing omics integration is essential for breakthroughs in personalized medicine and complex disease studies. Interdisciplinary collaboration will be crucial to overcoming data challenges and realizing the full potential of omics in biomedical advancements.
机构:
Northwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
LeDuc, Richard D.
Schwammle, Veit
论文数: 0引用数: 0
h-index: 0
机构:
Univ Southern Denmark, Dept Biochem & Mol Biol, DK-5230 Odense, DenmarkNorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Schwammle, Veit
Shortreed, Michael R.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Chem, 1101 Univ Ave, Madison, WI 53706 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Shortreed, Michael R.
Cesnik, Anthony J.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Chem, 1101 Univ Ave, Madison, WI 53706 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Cesnik, Anthony J.
Solntsev, Stefan K.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Chem, 1101 Univ Ave, Madison, WI 53706 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Solntsev, Stefan K.
Shaw, Jared B.
论文数: 0引用数: 0
h-index: 0
机构:
Pacific Northwest Natl Lab, Environm Mol Sci Lab, Richland, WA 99354 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Shaw, Jared B.
Martin, Maria J.
论文数: 0引用数: 0
h-index: 0
机构:
European Bioinformat Inst EMBL EBI, European Mol Biol Lab, Wellcome Trust Genome Campus, Cambridge CB10 1SD, EnglandNorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Martin, Maria J.
论文数: 引用数:
h-index:
机构:
Vizcaino, Juan A.
论文数: 引用数:
h-index:
机构:
Alpi, Emanuele
Danis, Paul
论文数: 0引用数: 0
h-index: 0
机构:
Consortium Top Down Prote, Cambridge, MA 02142 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Danis, Paul
Kelleher, Neil L.
论文数: 0引用数: 0
h-index: 0
机构:
Northwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Kelleher, Neil L.
Smith, Lloyd M.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Chem, 1101 Univ Ave, Madison, WI 53706 USA
Univ Wisconsin, Genome Ctr Wisconsin, Madison, WI 53706 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Smith, Lloyd M.
Ge, Ying
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Chem, 1101 Univ Ave, Madison, WI 53706 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Ge, Ying
Agar, Jeffrey N.
论文数: 0引用数: 0
h-index: 0
机构:
Northeastern Univ, Chem & Chem Biol, Boston, MA 02115 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Agar, Jeffrey N.
论文数: 引用数:
h-index:
机构:
Chamot-Rooke, Julia
Loo, Joseph A.
论文数: 0引用数: 0
h-index: 0
机构:Northwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Loo, Joseph A.
Pasa-Tolic, Ljiljana
论文数: 0引用数: 0
h-index: 0
机构:
Pacific Northwest Natl Lab, Environm Mol Sci Lab, Richland, WA 99354 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Pasa-Tolic, Ljiljana
Tsybin, Yury O.
论文数: 0引用数: 0
h-index: 0
机构:
Northeastern Univ, Chem & Chem Biol, Boston, MA 02115 USA
Spectroswiss, CH-1015 Lausanne, SwitzerlandNorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
机构:
Sichuan Univ, Dev & Related Dis Women & Children Key Lab Sichua, Key Lab Birth Defects & Related Dis Women & Child, Dept Gynecol & Obstet,Minist Educ,West China Hosp, Chengdu 610041, Peoples R ChinaSichuan Univ, Dev & Related Dis Women & Children Key Lab Sichua, Key Lab Birth Defects & Related Dis Women & Child, Dept Gynecol & Obstet,Minist Educ,West China Hosp, Chengdu 610041, Peoples R China
Li, Hongyi
Yang, Yang
论文数: 0引用数: 0
h-index: 0
机构:
Sichuan Univ, Dev & Related Dis Women & Children Key Lab Sichua, Key Lab Birth Defects & Related Dis Women & Child, Dept Gynecol & Obstet,Minist Educ,West China Hosp, Chengdu 610041, Peoples R ChinaSichuan Univ, Dev & Related Dis Women & Children Key Lab Sichua, Key Lab Birth Defects & Related Dis Women & Child, Dept Gynecol & Obstet,Minist Educ,West China Hosp, Chengdu 610041, Peoples R China
Yang, Yang
Hong, Weiqi
论文数: 0引用数: 0
h-index: 0
机构:
Sichuan Univ, Lab Aging Res & Canc Drug Target, State Key Lab Biotherapy, Natl Clin Res Ctr Geriatr,West China Hosp, 17,Block 3,Southern Renmin Rd, Chengdu 610041, Sichuan, Peoples R ChinaSichuan Univ, Dev & Related Dis Women & Children Key Lab Sichua, Key Lab Birth Defects & Related Dis Women & Child, Dept Gynecol & Obstet,Minist Educ,West China Hosp, Chengdu 610041, Peoples R China
Hong, Weiqi
Huang, Mengyuan
论文数: 0引用数: 0
h-index: 0
机构:
Sichuan Univ, Lab Aging Res & Canc Drug Target, State Key Lab Biotherapy, Natl Clin Res Ctr Geriatr,West China Hosp, 17,Block 3,Southern Renmin Rd, Chengdu 610041, Sichuan, Peoples R ChinaSichuan Univ, Dev & Related Dis Women & Children Key Lab Sichua, Key Lab Birth Defects & Related Dis Women & Child, Dept Gynecol & Obstet,Minist Educ,West China Hosp, Chengdu 610041, Peoples R China
Huang, Mengyuan
Wu, Min
论文数: 0引用数: 0
h-index: 0
机构:
Univ North Dakota, Sch Med & Hlth Sci, Dept Biomed Sci, Grand Forks, ND 58203 USASichuan Univ, Dev & Related Dis Women & Children Key Lab Sichua, Key Lab Birth Defects & Related Dis Women & Child, Dept Gynecol & Obstet,Minist Educ,West China Hosp, Chengdu 610041, Peoples R China
Wu, Min
Zhao, Xia
论文数: 0引用数: 0
h-index: 0
机构:
Sichuan Univ, Dev & Related Dis Women & Children Key Lab Sichua, Key Lab Birth Defects & Related Dis Women & Child, Dept Gynecol & Obstet,Minist Educ,West China Hosp, Chengdu 610041, Peoples R ChinaSichuan Univ, Dev & Related Dis Women & Children Key Lab Sichua, Key Lab Birth Defects & Related Dis Women & Child, Dept Gynecol & Obstet,Minist Educ,West China Hosp, Chengdu 610041, Peoples R China
机构:
Peoples Liberat Army Gen Hosp, Dept Gen Surg, Beijing 100853, Peoples R ChinaPeoples Liberat Army Gen Hosp, Dept Gen Surg, Beijing 100853, Peoples R China
Li, Tao
Leong, Mei Ha
论文数: 0引用数: 0
h-index: 0
机构:
Peoples Liberat Army Gen Hosp, Dept Gen Surg, Beijing 100853, Peoples R ChinaPeoples Liberat Army Gen Hosp, Dept Gen Surg, Beijing 100853, Peoples R China
Leong, Mei Ha
Harms, Bruce
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin Hosp, Dept Surg, Madison, WI 53792 USAPeoples Liberat Army Gen Hosp, Dept Gen Surg, Beijing 100853, Peoples R China
Harms, Bruce
Kennedy, Gregory
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin Hosp, Dept Surg, Madison, WI 53792 USAPeoples Liberat Army Gen Hosp, Dept Gen Surg, Beijing 100853, Peoples R China
Kennedy, Gregory
Chen, Lin
论文数: 0引用数: 0
h-index: 0
机构:
Peoples Liberat Army Gen Hosp, Dept Gen Surg, Beijing 100853, Peoples R ChinaPeoples Liberat Army Gen Hosp, Dept Gen Surg, Beijing 100853, Peoples R China
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USAHarvard TH Chan Sch Publ Hlth, Biostat Dept, Boston, MA 02115 USA
McDonald, Daniel
Franzosa, Eric A.
论文数: 0引用数: 0
h-index: 0
机构:
Harvard TH Chan Sch Publ Hlth, Biostat Dept, Boston, MA 02115 USA
Broad Inst, Cambridge, MA 02142 USAHarvard TH Chan Sch Publ Hlth, Biostat Dept, Boston, MA 02115 USA
Franzosa, Eric A.
Knight, Rob
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
Univ Calif San Diego, Dept Comp Sci & Engn, La Jolla, CA 92093 USAHarvard TH Chan Sch Publ Hlth, Biostat Dept, Boston, MA 02115 USA
机构:
Northwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
LeDuc, Richard D.
Schwammle, Veit
论文数: 0引用数: 0
h-index: 0
机构:
Univ Southern Denmark, Dept Biochem & Mol Biol, DK-5230 Odense, DenmarkNorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Schwammle, Veit
Shortreed, Michael R.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Chem, 1101 Univ Ave, Madison, WI 53706 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Shortreed, Michael R.
Cesnik, Anthony J.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Chem, 1101 Univ Ave, Madison, WI 53706 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Cesnik, Anthony J.
Solntsev, Stefan K.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Chem, 1101 Univ Ave, Madison, WI 53706 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Solntsev, Stefan K.
Shaw, Jared B.
论文数: 0引用数: 0
h-index: 0
机构:
Pacific Northwest Natl Lab, Environm Mol Sci Lab, Richland, WA 99354 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Shaw, Jared B.
Martin, Maria J.
论文数: 0引用数: 0
h-index: 0
机构:
European Bioinformat Inst EMBL EBI, European Mol Biol Lab, Wellcome Trust Genome Campus, Cambridge CB10 1SD, EnglandNorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Martin, Maria J.
论文数: 引用数:
h-index:
机构:
Vizcaino, Juan A.
论文数: 引用数:
h-index:
机构:
Alpi, Emanuele
Danis, Paul
论文数: 0引用数: 0
h-index: 0
机构:
Consortium Top Down Prote, Cambridge, MA 02142 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Danis, Paul
Kelleher, Neil L.
论文数: 0引用数: 0
h-index: 0
机构:
Northwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Kelleher, Neil L.
Smith, Lloyd M.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Chem, 1101 Univ Ave, Madison, WI 53706 USA
Univ Wisconsin, Genome Ctr Wisconsin, Madison, WI 53706 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Smith, Lloyd M.
Ge, Ying
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin, Dept Chem, 1101 Univ Ave, Madison, WI 53706 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Ge, Ying
Agar, Jeffrey N.
论文数: 0引用数: 0
h-index: 0
机构:
Northeastern Univ, Chem & Chem Biol, Boston, MA 02115 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Agar, Jeffrey N.
论文数: 引用数:
h-index:
机构:
Chamot-Rooke, Julia
Loo, Joseph A.
论文数: 0引用数: 0
h-index: 0
机构:Northwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Loo, Joseph A.
Pasa-Tolic, Ljiljana
论文数: 0引用数: 0
h-index: 0
机构:
Pacific Northwest Natl Lab, Environm Mol Sci Lab, Richland, WA 99354 USANorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
Pasa-Tolic, Ljiljana
Tsybin, Yury O.
论文数: 0引用数: 0
h-index: 0
机构:
Northeastern Univ, Chem & Chem Biol, Boston, MA 02115 USA
Spectroswiss, CH-1015 Lausanne, SwitzerlandNorthwestern Univ, Natl Resource Translat & Dev Prote, Evanston, IL 60208 USA
机构:
Sichuan Univ, Dev & Related Dis Women & Children Key Lab Sichua, Key Lab Birth Defects & Related Dis Women & Child, Dept Gynecol & Obstet,Minist Educ,West China Hosp, Chengdu 610041, Peoples R ChinaSichuan Univ, Dev & Related Dis Women & Children Key Lab Sichua, Key Lab Birth Defects & Related Dis Women & Child, Dept Gynecol & Obstet,Minist Educ,West China Hosp, Chengdu 610041, Peoples R China
Li, Hongyi
Yang, Yang
论文数: 0引用数: 0
h-index: 0
机构:
Sichuan Univ, Dev & Related Dis Women & Children Key Lab Sichua, Key Lab Birth Defects & Related Dis Women & Child, Dept Gynecol & Obstet,Minist Educ,West China Hosp, Chengdu 610041, Peoples R ChinaSichuan Univ, Dev & Related Dis Women & Children Key Lab Sichua, Key Lab Birth Defects & Related Dis Women & Child, Dept Gynecol & Obstet,Minist Educ,West China Hosp, Chengdu 610041, Peoples R China
Yang, Yang
Hong, Weiqi
论文数: 0引用数: 0
h-index: 0
机构:
Sichuan Univ, Lab Aging Res & Canc Drug Target, State Key Lab Biotherapy, Natl Clin Res Ctr Geriatr,West China Hosp, 17,Block 3,Southern Renmin Rd, Chengdu 610041, Sichuan, Peoples R ChinaSichuan Univ, Dev & Related Dis Women & Children Key Lab Sichua, Key Lab Birth Defects & Related Dis Women & Child, Dept Gynecol & Obstet,Minist Educ,West China Hosp, Chengdu 610041, Peoples R China
Hong, Weiqi
Huang, Mengyuan
论文数: 0引用数: 0
h-index: 0
机构:
Sichuan Univ, Lab Aging Res & Canc Drug Target, State Key Lab Biotherapy, Natl Clin Res Ctr Geriatr,West China Hosp, 17,Block 3,Southern Renmin Rd, Chengdu 610041, Sichuan, Peoples R ChinaSichuan Univ, Dev & Related Dis Women & Children Key Lab Sichua, Key Lab Birth Defects & Related Dis Women & Child, Dept Gynecol & Obstet,Minist Educ,West China Hosp, Chengdu 610041, Peoples R China
Huang, Mengyuan
Wu, Min
论文数: 0引用数: 0
h-index: 0
机构:
Univ North Dakota, Sch Med & Hlth Sci, Dept Biomed Sci, Grand Forks, ND 58203 USASichuan Univ, Dev & Related Dis Women & Children Key Lab Sichua, Key Lab Birth Defects & Related Dis Women & Child, Dept Gynecol & Obstet,Minist Educ,West China Hosp, Chengdu 610041, Peoples R China
Wu, Min
Zhao, Xia
论文数: 0引用数: 0
h-index: 0
机构:
Sichuan Univ, Dev & Related Dis Women & Children Key Lab Sichua, Key Lab Birth Defects & Related Dis Women & Child, Dept Gynecol & Obstet,Minist Educ,West China Hosp, Chengdu 610041, Peoples R ChinaSichuan Univ, Dev & Related Dis Women & Children Key Lab Sichua, Key Lab Birth Defects & Related Dis Women & Child, Dept Gynecol & Obstet,Minist Educ,West China Hosp, Chengdu 610041, Peoples R China
机构:
Peoples Liberat Army Gen Hosp, Dept Gen Surg, Beijing 100853, Peoples R ChinaPeoples Liberat Army Gen Hosp, Dept Gen Surg, Beijing 100853, Peoples R China
Li, Tao
Leong, Mei Ha
论文数: 0引用数: 0
h-index: 0
机构:
Peoples Liberat Army Gen Hosp, Dept Gen Surg, Beijing 100853, Peoples R ChinaPeoples Liberat Army Gen Hosp, Dept Gen Surg, Beijing 100853, Peoples R China
Leong, Mei Ha
Harms, Bruce
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin Hosp, Dept Surg, Madison, WI 53792 USAPeoples Liberat Army Gen Hosp, Dept Gen Surg, Beijing 100853, Peoples R China
Harms, Bruce
Kennedy, Gregory
论文数: 0引用数: 0
h-index: 0
机构:
Univ Wisconsin Hosp, Dept Surg, Madison, WI 53792 USAPeoples Liberat Army Gen Hosp, Dept Gen Surg, Beijing 100853, Peoples R China
Kennedy, Gregory
Chen, Lin
论文数: 0引用数: 0
h-index: 0
机构:
Peoples Liberat Army Gen Hosp, Dept Gen Surg, Beijing 100853, Peoples R ChinaPeoples Liberat Army Gen Hosp, Dept Gen Surg, Beijing 100853, Peoples R China
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USAHarvard TH Chan Sch Publ Hlth, Biostat Dept, Boston, MA 02115 USA
McDonald, Daniel
Franzosa, Eric A.
论文数: 0引用数: 0
h-index: 0
机构:
Harvard TH Chan Sch Publ Hlth, Biostat Dept, Boston, MA 02115 USA
Broad Inst, Cambridge, MA 02142 USAHarvard TH Chan Sch Publ Hlth, Biostat Dept, Boston, MA 02115 USA
Franzosa, Eric A.
Knight, Rob
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Pediat, La Jolla, CA 92093 USA
Univ Calif San Diego, Dept Comp Sci & Engn, La Jolla, CA 92093 USAHarvard TH Chan Sch Publ Hlth, Biostat Dept, Boston, MA 02115 USA