Constrained nuclear-electronic orbital QM/MM approach for simulating complex systems with quantum nuclear delocalization effects incorporated

被引:5
作者
Zhao, Xianyuan
Chen, Zehua
Yang, Yang [1 ]
机构
[1] Univ Wisconsin, Theoret Chem Inst, 1101 Univ Ave, Madison, WI 53706 USA
来源
CHEMICAL PHYSICS REVIEWS | 2024年 / 5卷 / 04期
基金
美国国家科学基金会;
关键词
DENSITY-FUNCTIONAL THEORY; FREE-ENERGY SIMULATIONS; BARRIER HYDROGEN-BONDS; MOLECULAR-DYNAMICS; VIBRATIONAL-SPECTRA; WAVE-FUNCTIONS; FORCE-FIELDS; BASIS-SETS; EFFICIENT; WATER;
D O I
10.1063/5.0226271
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The hybrid quantum mechanics/molecular mechanics (QM/MM) approach, which combines the accuracy of QM methods with the efficiency of MM methods, is widely used in the study of complex systems. However, past QM/MM implementations often neglect or face challenges in addressing nuclear quantum effects, despite their crucial role in many key chemical and biological processes. Recently, our group developed the constrained nuclear-electronic orbital (CNEO) theory, a cost-efficient approach that accurately addresses nuclear quantum effects, especially quantum nuclear delocalization effects. In this work, we integrate CNEO with the QM/MM approach through the electrostatic embedding scheme and apply the resulting CNEO QM/MM to two hydrogen-bonded complexes. We find that both solvation effects and nuclear quantum effects significantly impact hydrogen bond structures and dynamics. Notably, in the glutamic acid-glutamate complex, which mimics a common low barrier hydrogen bond in biological systems, CNEO QM/MM accurately predicts nearly equal proton sharing between the two residues. With an accurate description of both quantum nuclear delocalization effects and environmental effects, CNEO QM/MM is a promising new approach for simulating complex chemical and biological systems.
引用
收藏
页数:11
相关论文
共 120 条
[1]   An Electrostatically Embedded QM/MM Scheme for Electrified Interfaces [J].
Abidi, Nawras ;
Steinmann, Stephan N. .
ACS APPLIED MATERIALS & INTERFACES, 2023, 15 (20) :25009-25017
[2]   Gromacs: High performance molecular simulations through multi-level parallelism from laptops to supercomputers [J].
Abraham, Mark James ;
Murtola, Teemu ;
Schulz, Roland ;
Páll, Szilárd ;
Smith, Jeremy C. ;
Hess, Berk ;
Lindah, Erik .
SoftwareX, 2015, 1-2 :19-25
[3]   Evaluation of an ab initio quantum mechanical/molecular mechanical hybrid-potential link-atom method [J].
Amara, P ;
Field, MJ .
THEORETICAL CHEMISTRY ACCOUNTS, 2003, 109 (01) :43-52
[4]  
[Anonymous], About us
[5]  
[Anonymous], 2006, Center for High Throughput Computing, DOI DOI 10.21231/GNT1-HW21
[6]  
[Anonymous], 2000, Mod. Meth. Algorithms Quantum Chem
[7]   Adjusted connection atoms for combined quantum mechanical and molecular mechanical methods [J].
Antes, I ;
Thiel, W .
JOURNAL OF PHYSICAL CHEMISTRY A, 1999, 103 (46) :9290-9295
[8]   Solvent effects on hydrogen bonds - A theoretical study [J].
Aquino, AJA ;
Tunega, D ;
Haberhauer, G ;
Gerzabek, MH ;
Lischka, H .
JOURNAL OF PHYSICAL CHEMISTRY A, 2002, 106 (09) :1862-1871
[9]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[10]   GROMACS - A MESSAGE-PASSING PARALLEL MOLECULAR-DYNAMICS IMPLEMENTATION [J].
BERENDSEN, HJC ;
VANDERSPOEL, D ;
VANDRUNEN, R .
COMPUTER PHYSICS COMMUNICATIONS, 1995, 91 (1-3) :43-56