Epidemiological, Clinical, and Genomic Traits of PIV in Hospitalized Children After the COVID-19 Pandemic in Wuhan, China

被引:0
作者
Huang, Jiaming [1 ,2 ,3 ,4 ]
Li, Ying [1 ,2 ,3 ,4 ,5 ,6 ]
Chen, Hebin [5 ,6 ]
Liu, Haizhou [1 ,2 ,3 ]
Li, Wenqing [5 ,6 ]
Isiaka, Ismaila Damilare [1 ,2 ,3 ,4 ]
Du, Hui [5 ,6 ]
Noman, Muhammad [1 ,2 ,3 ,4 ]
Rizwan, Muhammad Arif [1 ,2 ,3 ,4 ]
Du, Qing [5 ,6 ]
Li, Yang [5 ,6 ]
Lin, Yaxin [5 ,6 ]
Liu, Yuehu [5 ,6 ]
Lu, Xiaoxia [5 ,6 ]
Liu, Di [1 ,2 ,3 ,4 ]
Yan, Yi [5 ,6 ]
机构
[1] Chinese Acad Sci, Wuhan Inst Virol, Ctr Biosafety Mega Sci, CAS Key Lab Special Pathogens & Biosafety, Wuhan, Peoples R China
[2] Chinese Acad Sci, Wuhan Inst Virol, Key Lab Virol & Biosafety, Wuhan, Peoples R China
[3] Chinese Acad Sci, Wuhan Inst Virol, Etiol Res Ctr, Computat Virol Grp, Wuhan, Peoples R China
[4] Univ Chinese Acad Sci, Beijing, Peoples R China
[5] Huazhong Univ Sci & Technol, Wuhan Childrens Hosp, Tongji Med Coll, Dept Resp Med, Wuhan, Peoples R China
[6] Huazhong Univ Sci & Technol, Wuhan Childrens Hosp, Inst Maternal & Child Hlth, Tongji Med Coll,Pediat Resp Dis Lab, Wuhan, Peoples R China
关键词
acute lower respiratory tract infections; children; epidemiology; genomic analysis; human parainfluenza virus; postpandemic era; HUMAN PARAINFLUENZA VIRUS; RESPIRATORY SYNCYTIAL VIRUS; PEDIATRIC-PATIENTS; INFLUENZA-VIRUS; UNITED-STATES; INFECTIONS; PATTERNS; TYPE-3; GENE;
D O I
10.1002/jmv.70117
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Human parainfluenza virus (PIV) is a main cause of acute lower respiratory tract infections (ALRTIs), which contributes to childrens' mortality worldwide; however, the epidemiology of PIVs following the SARS-CoV-2 pandemic is still not clarified, and poses risks of potential outbreaks. Herein, we conducted a retrospective observational study from September 26, 2020 to September 30, 2023 to assess PIV epidemiology in Wuhan, China, as well as the clinical characteristics of PIV infections. In total, 14,065 inpatients with ALRTIs were enrolled, of which 936 were identified to have PIV infection. We also obtained 69 PIV3 RNA to reveal its molecular traits. An alteration in PIV season pattern away from spring and summer prevalence was noted, as well as a progressive rise in its detection rate. PIV-related ALRTIs were more prevalent in male patients. PIV3 was the dominant PIV type in recent years. In comparison with the phase before the cancellation of Dynamic Zero-COVID Policy in December 2022, symptoms after its repeal were milder. All Wuhan strains were classified with C3f lineage and possibly evolved from native strains in China. Additionally, some mutations, such as Q499P in protein hemagglutinin-neuraminidase, should be given further attention. In summary, our study demonstrates the clinical characteristics of PIVs and genomic traits of PIV3 in Wuhan, China, thus holds importance for the diagnosis and control of PIV infections in the post-pandemic era.
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页数:14
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共 51 条
  • [1] Resurgence of Dengue Virus Serotype 3 in Minas Gerais, Brazil: A Case Report
    Adelino, Talita
    Lima, Mauricio
    Guimaraes, Natalia R.
    Xavier, Joilson
    Fonseca, Vagner
    Tome, Luiz Marcelo R.
    Pereira, Maira Alves
    Machado, Vanessa Ferreira
    Alcantara, Luiz Carlos Junior
    Iani, Felipe C. de Melo
    Giovanetti, Marta
    [J]. PATHOGENS, 2024, 13 (03):
  • [2] Hemagglutinin-Neuraminidase Gene Sequence-Based Reclassification of Human Parainfluenza Virus 3 Variants
    Almajhdi, Fahad N.
    [J]. INTERVIROLOGY, 2015, 58 (01) : 35 - 40
  • [3] Molecular evolution of the hemagglutinin-neuraminidase (HN) gene in human respirovirus 3
    Aso, Jumpei
    Kimura, Hirokazu
    Ishii, Haruyuki
    Saraya, Takeshi
    Kurai, Daisuke
    Nagasawa, Koo
    Matsushima, Yuki
    Ryo, Akihide
    Takizawa, Hajime
    [J]. VIRUS RESEARCH, 2020, 277
  • [4] Quantifying the RSV immunity debt following COVID-19: a public health matter
    Billard, Marie-Noelle
    Bont, Louis J.
    [J]. LANCET INFECTIOUS DISEASES, 2023, 23 (01) : 3 - 5
  • [5] BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
    Bouckaert, Remco
    Heled, Joseph
    Kuehnert, Denise
    Vaughan, Tim
    Wu, Chieh-Hsi
    Xie, Dong
    Suchard, Marc A.
    Rambaut, Andrew
    Drummond, Alexei J.
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2014, 10 (04)
  • [6] bModelTest: Bayesian phylogenetic site model averaging and model comparison
    Bouckaert, Remco R.
    Drummond, Alexei J.
    [J]. BMC EVOLUTIONARY BIOLOGY, 2017, 17 : 1 - 11
  • [7] The effects of the COVID-19 pandemic on community respiratory virus activity
    Chow, Eric J.
    Uyeki, Timothy M.
    Chu, Helen Y.
    [J]. NATURE REVIEWS MICROBIOLOGY, 2023, 21 (03) : 195 - 210
  • [8] Twelve years of SAMtools and BCFtools
    Danecek, Petr
    Bonfield, James K.
    Liddle, Jennifer
    Marshall, John
    Ohan, Valeriu
    Pollard, Martin O.
    Whitwham, Andrew
    Keane, Thomas
    McCarthy, Shane A.
    Davies, Robert M.
    Li, Heng
    [J]. GIGASCIENCE, 2021, 10 (02):
  • [9] Human parainfluenza virus circulation, United States, 2011-2019
    DeGroote, Nicholas P.
    Haynes, Amber K.
    Taylor, Calli
    Killerby, Marie E.
    Dahl, Rebecca M.
    Mustaquim, Desiree
    Gerber, Susan, I
    Watson, John T.
    [J]. JOURNAL OF CLINICAL VIROLOGY, 2020, 124
  • [10] Off-season RSV epidemics in Australia after easing of COVID-19 restrictions
    Eden, John-Sebastian
    Sikazwe, Chisha
    Xie, Ruopeng
    Deng, Yi-Mo
    Sullivan, Sheena G.
    Michie, Alice
    Levy, Avram
    Cutmore, Elena
    Blyth, Christopher C.
    Britton, Philip N.
    Crawford, Nigel
    Dong, Xiaomin
    Dwyer, Dominic E.
    Edwards, Kimberly M.
    Horsburgh, Bethany A.
    Foley, David
    Kennedy, Karina
    Minney-Smith, Cara
    Speers, David
    Tulloch, Rachel L.
    Holmes, Edward C.
    Dhanasekaran, Vijaykrishna
    Smith, David W.
    Kok, Jen
    Barr, Ian G.
    [J]. NATURE COMMUNICATIONS, 2022, 13 (01)