Single-Cell Sequencing and Transcriptome Analysis Explored Changes in Midnolin-Related Immune Microenvironment and Constructed Combined Prognostic Model for Pancreatic Cancer

被引:0
作者
Guan, Xiao [1 ]
Xu, Lei [2 ]
Liu, Jinsong [3 ]
Fei, He [1 ]
Wang, Chengfeng [1 ]
机构
[1] Chinese Acad Med Sci, Canc Hosp, Dept Pancreat & Gastr Surg, Beijing, Peoples R China
[2] Nanjing Med Univ, Affiliated Hosp 1, Dept Gen Surg, Nanjing, Jiangsu, Peoples R China
[3] Chinese Acad Med Sci, Canc Hosp, Dept VIP Med, Beijing, Peoples R China
基金
中国国家自然科学基金;
关键词
pancreatic cancer; midnolin; prognosis; immune landscape; bioinformatics; ADENOCARCINOMA; EXPRESSION; SURVIVAL;
D O I
10.2147/JIR.S503326
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Background: Pancreatic cancer has one of the worst prognoses of any malignant tumor. The value of MIDN, midnolin-related genes and midnolin-related immune infiltrating cells (MICs) in the prognosis of pancreatic cancer remains unknown. Methods: Single-cell analysis were used to identify midnolin-related genes. Immune cell infiltration was obtained using CIBERSORT. The prognostic midnolin-related genes were identified through the utilization of Cox regression and the least absolute selection operator (LASSO) approach. The combined prognostic model was created using multifactorial Cox regression analysis. Survival analyses, immune microenvironment assessments, drug sensitivity checks were performed to evaluate the combined model performance. Finally, cellular experiments were carried out to confirm MIDN significance in pancreatic cancer. Results: The combined model was constructed based on MIDN expression, prognostic model of 10 midnolin-related genes and M1 cell infiltration. Most immune checkpoint-related genes were expressed at greater levels in the low-risk group, suggesting a greater chance of immunotherapy's benefits. The most significant model gene, MIDN, was shown to have a function by cellular tests. In pancreatic cancer, MIDN knockdown drastically decreased pancreatic cancer cell lines' activity, proliferation, and invasive potential. Conclusion: The combined model helped assess the prognosis of pancreatic cancer and offered fresh perspectives on immunotherapy in particular.
引用
收藏
页码:2975 / 2990
页数:16
相关论文
共 50 条
  • [41] Immune cell-related prognostic risk model and tumor immune environment modulation in esophageal carcinoma based on single-cell and bulk RNA sequencing
    Xiao, Wen
    Liu, Pu
    Zhang, Wencheng
    Ma, Tengfei
    Wang, Guangshun
    THORACIC CANCER, 2024, 15 (14) : 1176 - 1186
  • [42] Single-cell RNA sequencing analysis identifies acute changes in the tumor microenvironment induced by interferon α gene therapy in a murine bladder cancer model
    Steinmetz, Alexis R.
    Pierce, Morgan
    Martini, Alberto
    Tholomier, Come
    Manyam, Ganiraju
    Chen, Yan
    Sood, Akshay
    Duplisea, Jonathan J.
    Johnson III, Burles A.
    Czerniak, Bogdan A.
    Lee, Byron H.
    Jagannath, Chinnaswamy
    Yla-Herttuala, Seppo
    Parker, Nigel R.
    McConkey, David J.
    Dinney, Colin P.
    Mokkapati, Sharada
    FRONTIERS IN IMMUNOLOGY, 2024, 15
  • [43] A Necroptosis-Related Prognostic Model of Uveal Melanoma Was Constructed by Single-Cell Sequencing Analysis and Weighted Co-Expression Network Analysis Based on Public Databases
    Xie, Jiaheng
    Chen, Liang
    Tang, Qikai
    Wei, Wei
    Cao, Yuan
    Wu, Chuyan
    Hang, Jing
    Zhang, Kai
    Shi, Jingping
    Wang, Ming
    FRONTIERS IN IMMUNOLOGY, 2022, 13
  • [44] Identification of B cell marker genes based on single-cell sequencing to establish a prognostic model and identify immune infiltration in osteosarcoma
    Zhang, Zhongmin
    Zhang, Jin
    Duan, Yuansheng
    Li, Xuesong
    Pan, Jie
    Wang, Guowen
    Shen, Bin
    FRONTIERS IN IMMUNOLOGY, 2022, 13
  • [45] Integration of single-cell RNA sequencing and bulk RNA transcriptome sequencing reveals a heterogeneous immune landscape and pivotal cell subpopulations associated with colorectal cancer prognosis
    Zhang, Qian
    Liu, Yang
    Wang, Xinyu
    Zhang, Cheng
    Hou, Mingxiao
    Liu, Yunen
    FRONTIERS IN IMMUNOLOGY, 2023, 14
  • [46] Exploring the interaction between immune cells in the prostate cancer microenvironment combining weighted correlation gene network analysis and single-cell sequencing: An integrated bioinformatics analysis
    Karoii, Danial Hashemi
    Bavandi, Sobhan
    Djamali, Melika
    Abroudi, Ali Shakeri
    DISCOVER ONCOLOGY, 2024, 15 (01)
  • [47] Eus-fnb combined with single-cell analyses reveal tumor microenvironment in advanced pancreatic cancer
    Zhang, Yao
    Zhao, Yizhou
    Zhao, Xiangyu
    Wang, Jiaxin
    Zou, Duowu
    JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, 2023, 38 : 23 - 23
  • [48] Eus-fnb combined with single-cell analyses reveal tumor microenvironment in advanced pancreatic cancer
    Zhang, Yao
    Zhao, Yizhou
    Zhao, Xiangyu
    Wang, Jiaxin
    Zou, Duowu
    JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, 2023, 38 : 23 - 23
  • [49] Diverse intratumoral heterogeneity and immune microenvironment of two HPV-related cervical cancer types revealed by single-cell RNA sequencing
    Li, Chunbo
    Liu, Danyang
    Zhao, Yu
    Ding, Yan
    Hua, Keqin
    JOURNAL OF MEDICAL VIROLOGY, 2023, 95 (06)
  • [50] Analysis of Cellular Heterogeneity in Immune Microenvironment of Primary Central Nervous System Lymphoma by Single-Cell Sequencing
    Wei, Boyuan
    Liu, Zhe
    Fan, Yue
    Wang, Shuwei
    Dong, Chao
    Rao, Wei
    Yang, Fan
    Cheng, Gang
    Zhang, Jianning
    FRONTIERS IN ONCOLOGY, 2021, 11