Single-Cell Sequencing and Transcriptome Analysis Explored Changes in Midnolin-Related Immune Microenvironment and Constructed Combined Prognostic Model for Pancreatic Cancer

被引:0
作者
Guan, Xiao [1 ]
Xu, Lei [2 ]
Liu, Jinsong [3 ]
Fei, He [1 ]
Wang, Chengfeng [1 ]
机构
[1] Chinese Acad Med Sci, Canc Hosp, Dept Pancreat & Gastr Surg, Beijing, Peoples R China
[2] Nanjing Med Univ, Affiliated Hosp 1, Dept Gen Surg, Nanjing, Jiangsu, Peoples R China
[3] Chinese Acad Med Sci, Canc Hosp, Dept VIP Med, Beijing, Peoples R China
基金
中国国家自然科学基金;
关键词
pancreatic cancer; midnolin; prognosis; immune landscape; bioinformatics; ADENOCARCINOMA; EXPRESSION; SURVIVAL;
D O I
10.2147/JIR.S503326
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Background: Pancreatic cancer has one of the worst prognoses of any malignant tumor. The value of MIDN, midnolin-related genes and midnolin-related immune infiltrating cells (MICs) in the prognosis of pancreatic cancer remains unknown. Methods: Single-cell analysis were used to identify midnolin-related genes. Immune cell infiltration was obtained using CIBERSORT. The prognostic midnolin-related genes were identified through the utilization of Cox regression and the least absolute selection operator (LASSO) approach. The combined prognostic model was created using multifactorial Cox regression analysis. Survival analyses, immune microenvironment assessments, drug sensitivity checks were performed to evaluate the combined model performance. Finally, cellular experiments were carried out to confirm MIDN significance in pancreatic cancer. Results: The combined model was constructed based on MIDN expression, prognostic model of 10 midnolin-related genes and M1 cell infiltration. Most immune checkpoint-related genes were expressed at greater levels in the low-risk group, suggesting a greater chance of immunotherapy's benefits. The most significant model gene, MIDN, was shown to have a function by cellular tests. In pancreatic cancer, MIDN knockdown drastically decreased pancreatic cancer cell lines' activity, proliferation, and invasive potential. Conclusion: The combined model helped assess the prognosis of pancreatic cancer and offered fresh perspectives on immunotherapy in particular.
引用
收藏
页码:2975 / 2990
页数:16
相关论文
共 50 条
  • [31] Combining single-cell sequencing data to construct a prognostic signature to predict survival, immune microenvironment, and immunotherapy response in gastric cancer patients
    Hu, Bo
    Meng, Yan
    Qu, Chao
    Wang, Bing-Yan
    Xiu, Dian-Rong
    FRONTIERS IN IMMUNOLOGY, 2022, 13
  • [32] Combining single-cell and bulk RNA sequencing, NK cell marker genes reveal a prognostic and immune status in pancreatic ductal adenocarcinoma
    Ouyang, Yonghao
    Shen, Rongxi
    Chu, Lihua
    Fu, Chengchao
    Hu, Wang
    Huang, Haoxuan
    Zhang, Zhicheng
    Jiang, Ming
    Chen, Xin
    SCIENTIFIC REPORTS, 2024, 14 (01):
  • [33] Epithelial cell-related prognostic risk model in breast cancer based on single-cell and bulk RNA sequencing
    Xia, Man-zhi
    Yan, Hai-chao
    HELIYON, 2024, 10 (17)
  • [34] Integrating Bulk Transcriptome and Single-Cell RNA Sequencing Data Reveals the Landscape of the Immune Microenvironment in Thoracic Aortic Aneurysms
    Wang, Qunhui
    Guo, Xian
    Huo, Bo
    Feng, Xin
    Fang, Ze-Min
    Jiang, Ding-Sheng
    Wei, Xiang
    FRONTIERS IN CARDIOVASCULAR MEDICINE, 2022, 9
  • [35] Identification of an immune subtype-related prognostic signature of clear cell renal cell carcinoma based on single-cell sequencing analysis
    Fan, Zongyao
    Xu, Hewei
    Ge, Qingyu
    Li, Weilong
    Zhang, Junjie
    Pu, Yannan
    Chen, Zhengsen
    Zhang, Sicong
    Xue, Jun
    Shen, Baixin
    Ding, Liucheng
    Wei, Zhongqing
    FRONTIERS IN ONCOLOGY, 2023, 13
  • [36] Identification of basement membrane-related prognostic model associated with the immune microenvironment and synthetic therapy response in pancreatic cancer: integrated bioinformatics analysis and clinical validation
    Zhang, Biao
    Chen, Xu
    Song, Huiyi
    Gao, Xue
    Ma, Shurong
    Ji, Hongying
    Qu, Huixian
    Xia, Shilin
    Shang, Dong
    JOURNAL OF CANCER, 2024, 15 (19): : 6273 - 6298
  • [37] Identification and validation of biomarkers for epithelial-mesenchymal transition-related cells to estimate the prognosis and immune microenvironment in primary gastric cancer by the integrated analysis of single-cell and bulk RNA sequencing data
    Shen, Kaiyu
    Ke, Shuaiyi
    Chen, Binyu
    Zhang, Tiantian
    Wang, Hongtai
    Lv, Jianhui
    Gao, Wencang
    MATHEMATICAL BIOSCIENCES AND ENGINEERING, 2023, 20 (08) : 13798 - 13823
  • [38] Analysis of N6-methyladenosine-related lncRNAs in the tumor immune microenvironment and their prognostic role in pancreatic cancer
    Liu, Yong
    Wang, Tao
    Fang, Ziqi
    Kong, Junjie
    Liu, Jun
    JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY, 2022, 148 (07) : 1613 - 1626
  • [39] Construction and Validation of a Novel T/NK-Cell Prognostic Signature for Pancreatic Cancer Based on Single-Cell RNA Sequencing
    Wang, Yu
    Zhang, Cong
    Zhang, Jianlu
    Huang, Haoran
    Guo, Junchao
    CANCER INVESTIGATION, 2024, 42 (10) : 876 - 892
  • [40] Single-cell transcriptome analysis revealed a suppressive tumor immune microenvironment in EGFR mutant lung adenocarcinoma
    Yang, Lei
    He, Yun-Ting
    Dong, Song
    Wei, Xue-Wu
    Chen, Zhi-Hong
    Zhang, Bo
    Chen, Wei-Dong
    Yang, Xiao-Rong
    Wang, Fen
    Shang, Xue-Meng
    Zhong, Wen-Zhao
    Wu, Yi-Long
    Zhou, Qing
    JOURNAL FOR IMMUNOTHERAPY OF CANCER, 2022, 10 (02)