Draft genome sequence of a novel species of Radiobacillus (strain PE A8.2) isolated from a red Antarctic seaweed

被引:0
作者
Goddard, Matias [1 ]
Leiva, Sergio [1 ]
机构
[1] Univ Austral Chile, Inst Biochem & Microbiol, Valdivia, Chile
关键词
Antarctica; seaweed; epiphytic bacteria; Radiobacillus; COMPLETENESS; SP;
D O I
10.1128/mra.01276-24
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
We report the draft genome sequence of Radiobacillus sp. nov. PE A8.2, an endospore-forming bacterium isolated from the surface of the red seaweed Pyropia endiviifolia collected in King George Island, Antarctica. The genome assembly comprised 5,183,530 bp, with a 37.5% G+C content and 5,077 coding sequences.
引用
收藏
页数:3
相关论文
共 15 条
[1]   Phylogeny and bioactivity of epiphytic Gram-positive bacteria isolated from three co-occurring antarctic macroalgae [J].
Alvarado, Pamela ;
Huang, Ying ;
Wang, Jian ;
Garrido, Ignacio ;
Leiva, Sergio .
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 2018, 111 (09) :1543-1555
[2]   The RAST server: Rapid annotations using subsystems technology [J].
Aziz, Ramy K. ;
Bartels, Daniela ;
Best, Aaron A. ;
DeJongh, Matthew ;
Disz, Terrence ;
Edwards, Robert A. ;
Formsma, Kevin ;
Gerdes, Svetlana ;
Glass, Elizabeth M. ;
Kubal, Michael ;
Meyer, Folker ;
Olsen, Gary J. ;
Olson, Robert ;
Osterman, Andrei L. ;
Overbeek, Ross A. ;
McNeil, Leslie K. ;
Paarmann, Daniel ;
Paczian, Tobias ;
Parrello, Bruce ;
Pusch, Gordon D. ;
Reich, Claudia ;
Stevens, Rick ;
Vassieva, Olga ;
Vonstein, Veronika ;
Wilke, Andreas ;
Zagnitko, Olga .
BMC GENOMICS, 2008, 9 (1)
[3]   Trimmomatic: a flexible trimmer for Illumina sequence data [J].
Bolger, Anthony M. ;
Lohse, Marc ;
Usadel, Bjoern .
BIOINFORMATICS, 2014, 30 (15) :2114-2120
[4]  
Cc B, 2017, Open Access Journal of Microbiology & Biotechnology, V2, DOI [10.23880/oajmb-16000122, 10.23880/OAJMB-16000122, DOI 10.23880/OAJMB-16000122]
[5]   EzBioCloud: a genome- driven database and platform for microbiome identification and discovery [J].
Chalita, Mauricio ;
Kim, Yeong Ouk ;
Park, Sein ;
Oh, Hyun-Seok ;
Cho, Jae Hyoung ;
Moon, Jeongsup ;
Baek, Nuga ;
Moon, Changsik ;
Lee, Kihyun ;
Yang, Junwon ;
Nam, Gi Gyun ;
Jung, Yeonjae ;
Na, Seong-In ;
Bailey, Michael James ;
Chun, Jongsik .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2024, 74 (06)
[6]   QUAST: quality assessment tool for genome assemblies [J].
Gurevich, Alexey ;
Saveliev, Vladislav ;
Vyahhi, Nikolay ;
Tesler, Glenn .
BIOINFORMATICS, 2013, 29 (08) :1072-1075
[7]   Antarctic strain of Bacillus sp. with extracellular agarolitic and alginate-lyase activities [J].
Lavin, Paris ;
Gallardo-Cerda, Jorge ;
Torres-Diaz, Cristian ;
Asencio, Geraldine ;
Gonzalez, Marcelo .
GAYANA, 2013, 77 (02) :75-82
[8]   Diversity of pigmented Gram-positive bacteria associated with marine macroalgae from Antarctica [J].
Leiva, Sergio ;
Alvarado, Pamela ;
Huang, Ying ;
Wang, Jian ;
Garrido, Ignacio .
FEMS MICROBIOLOGY LETTERS, 2015, 362 (24)
[9]   Radiobacillus deserti gen. nov., sp. nov., a UV-resistant bacterium isolated from desert soil [J].
Li, Juan ;
Zhang, Binglin ;
Liu, Guangxiu ;
Liu, Yang ;
Yang, Hui ;
Yang, Ruiqi ;
Huang, Yixuan ;
Li, Shiweng ;
Chen, Tuo ;
Zhang, Wei ;
Zhang, Gaosen .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2020, 70 (12) :6338-6347
[10]   Genome sequence-based species delimitation with confidence intervals and improved distance functions [J].
Meier-Kolthoff, Jan P. ;
Auch, Alexander F. ;
Klenk, Hans-Peter ;
Goeker, Markus .
BMC BIOINFORMATICS, 2013, 14