Multi-Dataset Multi-Task Learning for COVID-19 Prognosis

被引:5
作者
Ruffini, Filippo [1 ]
Tronchin, Lorenzo [1 ]
Wu, Zhuoru [2 ]
Chen, Wenting [3 ]
Soda, Paolo [1 ]
Shen, Linlin [2 ]
Guarrasil, Valerio [1 ]
机构
[1] Univ Campus Biomed Roma, Unit Comp Syst & Bioinformat, Dept Engn, Rome, Italy
[2] Shenzhen Univ, Coll Comp Sci & Software Engn, Shenzhen, Peoples R China
[3] City Univ Hong Kong, Dept Elect Engn, Hong Kong, Peoples R China
来源
MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION - MICCAI 2024, PT XII | 2024年 / 15012卷
基金
瑞典研究理事会;
关键词
Chest X-rays; Deep Learning; CNN; Transfer Learning; SYSTEM;
D O I
10.1007/978-3-031-72390-2_24
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
In the fight against the COVID-19 pandemic, leveraging artificial intelligence to predict disease outcomes from chest radiographic images represents a significant scientific aim. The challenge, however, lies in the scarcity of large, labeled datasets with compatible tasks for training deep learning models without leading to overfitting. Addressing this issue, we introduce a novel multi-dataset multi-task training framework that predicts COVID-19 prognostic outcomes from chest X-rays (CXR) by integrating correlated datasets from disparate sources, distant from conventional multi-task learning approaches, which rely on datasets with multiple and correlated labeling schemes. Our framework hypothesizes that assessing severity scores enhances the model's ability to classify prognostic severity groups, thereby improving its robustness and predictive power. The proposed architecture comprises a deep convolutional network that receives inputs from two publicly available CXR datasets, AIforCOVID for severity prognostic prediction and BRIXIA for severity score assessment, and branches into task-specific fully connected output networks. Moreover, we propose a multi-task loss function, incorporating an indicator function, to exploit multi-dataset integration. The effectiveness and robustness of the proposed approach are demonstrated through significant performance improvements in prognosis classification tasks across 18 different convolutional neural network backbones in different evaluation strategies. This improvement is evident over single-task baselines and standard transfer learning strategies, supported by extensive statistical analysis, showing great application potential.
引用
收藏
页码:251 / 261
页数:11
相关论文
共 34 条
[1]   Multi-task deep learning based CT imaging analysis for COVID-19 pneumonia: Classification and segmentation [J].
Amyar, Amine ;
Modzelewski, Romain ;
Li, Hua ;
Ruan, Su .
COMPUTERS IN BIOLOGY AND MEDICINE, 2020, 126
[2]   Predicting Mechanical Ventilation and Mortality in COVID-19 Using Radiomics and Deep Learning on Chest Radiographs: A Multi-Institutional Study [J].
Bae, Joseph ;
Kapse, Saarthak ;
Singh, Gagandeep ;
Gattu, Rishabh ;
Ali, Syed ;
Shah, Neal ;
Marshall, Colin ;
Pierce, Jonathan ;
Phatak, Tej ;
Gupta, Amit ;
Green, Jeremy ;
Madan, Nikhil ;
Prasanna, Prateek .
DIAGNOSTICS, 2021, 11 (10)
[3]   COVID-MTL: Multitask learning with Shift3D and random-weighted loss for COVID-19 diagnosis and severity assessment [J].
Bao, Guoqing ;
Chen, Huai ;
Liu, Tongliang ;
Gong, Guanzhong ;
Yin, Yong ;
Wang, Lisheng ;
Wang, Xiuying .
PATTERN RECOGNITION, 2022, 124
[4]   Chest X-ray versus chest computed tomography for outcome prediction in hospitalized patients with COVID-19 [J].
Borghesi, Andrea ;
Golemi, Salvatore ;
Scrimieri, Alessandra ;
Nicosia, Costanza Maria Carlotta ;
Zigliani, Angelo ;
Farina, Davide ;
Maroldi, Roberto .
RADIOLOGIA MEDICA, 2022, 127 (03) :305-308
[5]   COVID-19 outbreak in Italy: experimental chest X-ray scoring system for quantifying and monitoring disease progression [J].
Borghesi, Andrea ;
Maroldi, Roberto .
RADIOLOGIA MEDICA, 2020, 125 (05) :509-513
[6]   Prognostic models in COVID-19 infection that predict severity: a systematic review [J].
Buttia, Chepkoech ;
Llanaj, Erand ;
Raeisi-Dehkordi, Hamidreza ;
Kastrati, Lum ;
Amiri, Mojgan ;
Mecani, Renald ;
Taneri, Petek Eylul ;
Ochoa, Sergio Alejandro Gomez ;
Raguindin, Peter Francis ;
Wehrli, Faina ;
Khatami, Farnaz ;
Espinola, Octavio Pano ;
Rojas, Lyda Z. ;
de Mortanges, Aurelie Pahud ;
Macharia-Nimietz, Eric Francis ;
Alijla, Fadi ;
Minder, Beatrice ;
Leichtle, Alexander B. ;
Luethi, Nora ;
Ehrhard, Simone ;
Que, Yok-Ai ;
Fernandes, Laurenz Kopp ;
Hautz, Wolf ;
Muka, Taulant .
EUROPEAN JOURNAL OF EPIDEMIOLOGY, 2023, 38 (04) :355-372
[7]   Multitask learning [J].
Caruana, R .
MACHINE LEARNING, 1997, 28 (01) :41-75
[8]   Predicting COVID-19 Pneumonia Severity on Chest X-ray With Deep Learning [J].
Cohen, Joseph Paul ;
Dao, Lan ;
Morrison, Paul ;
Roth, Karsten ;
Bengio, Yoshua ;
Shen, Beiyi ;
Abbasi, Almas ;
Hoshmand-Kochi, Mahsa ;
Ghassemi, Marzyeh ;
Li, Haifang ;
Duong, Tim Q. .
CUREUS JOURNAL OF MEDICAL SCIENCE, 2020, 12 (07)
[9]   Automatic scoring of COVID-19 severity in X-ray imaging based on a novel deep learning workflow [J].
Danilov, Viacheslav V. ;
Litmanovich, Diana ;
Proutski, Alex ;
Kirpich, Alexander ;
Nefaridze, Dato ;
Karpovsky, Alex ;
Gankin, Yuriy .
SCIENTIFIC REPORTS, 2022, 12 (01)
[10]   Multimodal explainability via latent shift applied to COVID-19 stratification [J].
Guarrasi, Valerio ;
Tronchin, Lorenzo ;
Albano, Domenico ;
Faiella, Eliodoro ;
Fazzini, Deborah ;
Santucci, Domiziana ;
Soda, Paolo .
PATTERN RECOGNITION, 2024, 156