Towards a genome-scale metabolic model of Dunaliella salina

被引:1
作者
Cunha, Emanuel [1 ]
Sousa, Vitor [1 ]
Vicente, Antonio [1 ,2 ]
Geada, Pedro [1 ,2 ]
Dias, Oscar [1 ,2 ]
机构
[1] Univ Minho, Ctr Biol Engn, P-4710057 Braga, Portugal
[2] LABBELS Associate Lab, Braga, Guimaraes, Portugal
关键词
beta-carotene; Carotenoid; Dunaliella salina; Genome-scale Metabolic Model; Lutein; Microalgae; Systems Biology; BIOTECHNOLOGY;
D O I
10.1016/j.ifacol.2024.10.007
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Dunaliella salina is a green algae known for its ability to produce carotenoids. However, maximizing its production while achieving significant biomass yields remains challenging, which can be addressed through systems biology tools like genome-scale metabolic models. This work presents the first genome-scale metabolic model for D. salina, enabling an in silico analysis and optimization of beta-carotene and lutein production. In silico simulations predict that reducing nitrate and phosphate availability increases the potential for carotenoid production. The flux scanning based on the enforced objective flux method was applied, allowing the identification of reactions that induce the cumulative production of both carotenoids and biomass. Copyright (c) 2024 The Authors. This is an open access article under the CC BY-NC-ND license (https://creativecommons.org/licenses/by-nc-nd/4.0/)
引用
收藏
页码:37 / 42
页数:6
相关论文
共 46 条
[1]   Unconventional high-value products from microalgae: A review [J].
Abu-Ghosh, Said ;
Dubinsky, Zvy ;
Verdelho, Vitor ;
Iluz, David .
BIORESOURCE TECHNOLOGY, 2021, 329
[2]   GLYCEROL PRODUCTION BY DUNALIELLA [J].
BENAMOTZ, A ;
SUSSMAN, I ;
AVRON, M .
EXPERIENTIA, 1982, 38 (01) :49-52
[3]   Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii [J].
Boyle, Nanette R. ;
Morgan, John A. .
BMC SYSTEMS BIOLOGY, 2009, 3
[4]  
Buchfink B., 2014, Fast and sensitive protein alignment using DIAMOND
[5]   merlin, an improved framework for the reconstruction of high-quality genome-scale metabolic models [J].
Capela, Joao ;
Lagoa, Davide ;
Rodrigues, Ruben ;
Cunha, Emanuel ;
Cruz, Fernando ;
Barbosa, Ana ;
Bastos, Jose ;
Lima, Diogo ;
Ferreira, Eugenio C. ;
Rocha, Miguel ;
Dias, Oscar .
NUCLEIC ACIDS RESEARCH, 2022, 50 (11) :6052-6066
[6]  
caroteneofthegreenalgadunaliellasalinaunderredlightstress, JournalofMicrobiologyandBiotechnology
[7]   The MetaCyc database of metabolic pathways and enzymes - a 2019 update [J].
Caspi, Ron ;
Billington, Richard ;
Keseler, Ingrid M. ;
Kothari, Anamika ;
Krummenacker, Markus ;
Midford, Peter E. ;
Ong, Wai Kit ;
Paley, Suzanne ;
Subhraveti, Pallavi ;
Karp, Peter D. .
NUCLEIC ACIDS RESEARCH, 2020, 48 (D1) :D445-D453
[8]   BRENDA, the ELIXIR core data resource in 2021: new developments and updates [J].
Chang, Antje ;
Jeske, Lisa ;
Ulbrich, Sandra ;
Hofmann, Julia ;
Koblitz, Julia ;
Schomburg, Ida ;
Neumann-Schaal, Meina ;
Jahn, Dieter ;
Schomburg, Dietmar .
NUCLEIC ACIDS RESEARCH, 2021, 49 (D1) :D498-D508
[9]   Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism [J].
Chang, Roger L. ;
Ghamsari, Lila ;
Manichaikul, Ani ;
Hom, Erik F. Y. ;
Balaji, Santhanam ;
Fu, Weiqi ;
Shen, Yun ;
Hao, Tong ;
Palsson, Bernhard O. ;
Salehi-Ashtiani, Kourosh ;
Papin, Jason A. .
MOLECULAR SYSTEMS BIOLOGY, 2011, 7
[10]   Lipid production in Dunaliella salina under autotrophic, heterotrophic, and mixotrophic conditions [J].
Chavoshi, Zohreh Zare ;
Shariati, Mansour .
BIOLOGIA, 2019, 74 (12) :1579-1590