Insights into the structural and interactional aspects of 1-phenyl-5-(thiophen-2-yl)-1H-tetrazole: crystallographic, Hirshfeld surface, computational, and docking analyses

被引:0
|
作者
Akhileshwari, P. [1 ]
Preetham, R. [3 ,4 ]
Sridhar, M. A. [2 ]
Sadashiva, M. P. [4 ]
机构
[1] JSS Coll Arts Commerce & Sci, PG Dept Phys, Ooty Rd, Mysuru 570025, Karnataka, India
[2] Univ Mysore, Dept Studies Phys, Mysuru 570006, India
[3] Malnad Coll Engn, Dept Chem, Hassan 573202, Karnataka, India
[4] Univ Mysore, Dept Studies Chem, Mysuru 570006, India
关键词
Tetrazole; XRD; Hirshfeld surface analysis; HOMO-LUMO; DFT; Molecular docking; DERIVATIVES; TETRAZOLES; DFT;
D O I
10.1007/s11224-024-02418-x
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Tetrazoles are the bioisoster of carboxylic acid, and their derivatives demonstrated promising anticancer activity. Hybridization of tetrazole moiety with other anticancer pharmacophores may provide novel candidates with anticancer potency. In this regard, the 1-phenyl-5-(thiophen-2-yl)-1H-tetrazole (C11H8N4S) is characterized by LC-MS, C13 NMR analysis, and single-crystal X-ray diffraction. The molecule crystallizes in the monoclinic crystal system with the space group P21/n. Hirshfeld surface analysis was carried out to quantify the intermolecular interactions and crystal packing. Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from N-H/H-N (30.7%) interaction. Geometry optimization of the molecule is done using density functional theory (DFT) at the B3LYP hybrid functional. Theoretical structure parameters are compared with the experimentally determined structure. The computed energy gap between the frontier molecular orbitals is 4.81 eV. The RDG calculations revealed the presence of C-H & mldr;S and C-H & mldr;N noncovalent interaction in the molecule. Molecular docking studies show that the binding affinity between protein and ligand is - 8.03 kcal/mol.
引用
收藏
页数:12
相关论文
共 50 条
  • [1] 1-Phenyl-5-(piperidinomethyl)-1H-tetrazole
    Lyakhov, AS
    Voitekhovich, SV
    Gaponik, PN
    Ivashkevich, LS
    ACTA CRYSTALLOGRAPHICA SECTION C-STRUCTURAL CHEMISTRY, 2004, 60 (04): : O293 - O294
  • [2] 1-Phenyl-5-{[2-(trimethylsilyl)ethyl]sulfonyl}-1H-tetrazole
    Tymann, David
    Nelson, Bjoern
    Strohmann, Carsten
    Preut, Hans
    Hiersemann, Martin
    ACTA CRYSTALLOGRAPHICA SECTION E-STRUCTURE REPORTS ONLINE, 2011, 67 : O2369 - U581
  • [3] Crystal structure, Hirshfeld surface analysis and computational studies of 5-[(prop-2-en-1-yl)sulfan-yl]-1-[2-(trifluoromethyl)phenyl]-1H-tetrazole
    Slyvka, Yurii
    Goreshnik, Evgeny
    Pokhodylo, Nazariy
    Mys'kiv, Marian
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2019, 75 : 1331 - +
  • [4] Crystal structure of 1-phenyl-N′-(1-phenyl-5-(thiophen-2-yl)-1H-pyrazole-3-carbonyl)-5-(thiophen-2-yl)-1H-pyrazole-3-carbohydrazide, C28H20N6O2S2
    Baashen, Mohammed
    Abdel-Wahab, Bakr F.
    Hegazy, Amany S.
    Kariuki, Benson M.
    El-Hiti, Gamal A.
    ZEITSCHRIFT FUR KRISTALLOGRAPHIE-NEW CRYSTAL STRUCTURES, 2018, 233 (04): : 617 - 619
  • [5] 5-[4-(1H-Imidazol-1-yl)phenyl]-1H-tetrazole
    Tong, Shao-Wei
    Song, Wen-Dong
    Li, Shi-Jie
    Miao, Dong-Liang
    An, Jing-Bo
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2012, 68 : O1274 - +
  • [6] Crystal structures of (Z)-5-[2-(benzo[b]thiophen-2-yl)-1-(3,5-dimethoxyphenyl)ethenyl]-1H-tetrazole and (Z)-5-[2-(benzo[b]thiophen-3-yl)-1-(3,4,5-trimethoxyphenyl)ethenyl]-1H-tetrazole
    Penthala, Narsimha Reddy
    Yadlapalli, Jaishankar K. B.
    Parkin, Sean
    Crooks, Peter A.
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2016, 72 : 652 - +
  • [7] Synthesis, spectroscopic characterization, crystallographic studies, Hirshfeld surface analysis, DFT, and molecular docking studies of (4-phenylthiazol-2-yl)(thiophen-2-yl)methanone
    Suresh, Rajaghatta N.
    Naveena, C. S.
    Swaroop, Toreshettahally R.
    Mantelingu, Kempegowda
    Rangappa, Kanchugarakoppal S.
    JOURNAL OF MOLECULAR STRUCTURE, 2025, 1323
  • [8] 5-(pyrrolidin-2-yl)-1H-tetrazole and 5-[(pyrrolidin-2-yl)methyl]-1H-tetrazole:: Proline surrogates with increased potential in asymmetric catalysis
    Limbach, M
    CHEMISTRY & BIODIVERSITY, 2006, 3 (02) : 119 - 133
  • [9] Synthesis of 5-[1-Aryl-pyrrol-2-yl]-1H-tetrazole
    Liu, Wei
    Ma, Yuan
    Yin, Ying-Wu
    Zhao, Yu-Fen
    Gaodeng Xuexiao Huaxue Xuebao/Chemical Journal of Chinese Universities, 2006, 27 (08): : 1472 - 1475
  • [10] Synthesis of 5-[1-aryl-pyrrol-2-yl]-1H-tetrazole
    Liu Wei
    Ma Yuan
    Yin Ying-Wu
    Zhao Yu-Fen
    CHEMICAL JOURNAL OF CHINESE UNIVERSITIES-CHINESE, 2006, 27 (08): : 1472 - 1475