Development and validation of a prognostic and drug sensitivity model for gastric cancer utilizing telomere-related genes

被引:2
作者
Li, Xiaoxiao [1 ]
Wang, Xiaoxuan [2 ]
Yu, Fuxiang [4 ]
Li, Zhongguo [4 ]
Chen, Daxin [4 ]
Qi, Yingxue [2 ]
Lu, Zhongyu [2 ]
Liu, Yaqin [2 ]
Chen, Dongsheng [2 ,3 ]
Wu, Yaoqiang [4 ]
机构
[1] China Med Univ, Dept Thorac Surg, Hosp 1, Shenyang, Liaoning, Peoples R China
[2] Nanjing Simcere Med Lab Sci Co Ltd, Jiangsu Simcere Diagnost Co Ltd, State Key Lab Neurol & Oncol Drug Dev, Nanjing, Jiangsu, Peoples R China
[3] Jinzhou Med Univ, Canc Ctr, Affiliated Hosp 1, Jinzhou, Liaoning, Peoples R China
[4] Dandong First Hosp, Dept Gen Surg, Dandong, Liaoning, Peoples R China
关键词
Gastric cancer; Telomere; Prognostic risk model; Immune-cell infiltration; Drug sensitivity; EXPRESSION; LENGTH; CELLS; RNAS;
D O I
10.1016/j.tranon.2024.102232
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Background: Gastric cancer (GC) poses a major global health challenge because of its unfavorable prognosis. Elevated telomerase activity has been linked to the rapid growth and invasiveness of GC tumors. Investigating the expression profiles of telomerase could improve our understanding of the mechanisms underlying telomererelated GC advancement and its applicability as potential targets for diverse therapeutic strategies for GC. Methods: The TCGA and GEO databases were utilized to access transcriptome and clinical data related to GC. After assessing differentially expressed genes (DEGs), a prognostic risk model was developed through Cox univariate regression, LASSO-Cox regression. The prognostic risk model was validated using data from the GSE62254 cohort. The significant influence of the risk model on the tumor immune microenvironment (TIME) and its sensitivity to various drugs was assessed. Results: Differential expression analysis identified 328 significantly telomere-related DEGs in GC, with 35 of them showing a significant association with GC prognosis. A predictive risk model composed of four telomere-related genes (TRGs) was established, enabling the accurate stratification of GC patients into two distinct prognostic groups. The LASSO risk model demonstrated notable variations in immune-cell infiltration and drug sensitivity patterns between high- and low-risk groups. Conclusions: The study establishes suggestive relationships between four TRGs (LRRN1, SNCG, GAMT, and PDE1B) and the prognosis of GC. The comprehensive characterization of the TRG model reveals their possible roles in the prognosis, TIME, and drug sensitivity in GC.
引用
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页数:9
相关论文
共 47 条
[1]   An update on gastric cancer [J].
Ahmad, Syed A. ;
Xia, Brent T. ;
Bailey, Christina E. ;
Abbott, Daniel E. ;
Helmink, Beth A. ;
Daly, Meghan C. ;
Thota, Ramya ;
Schlegal, Cameron ;
Winer, Leah K. ;
Ahmad, S. Ameen ;
Al Humaidi, Ali H. ;
Parikh, Alexander A. .
CURRENT PROBLEMS IN SURGERY, 2016, 53 (10) :449-490
[2]   CIRCULAR RNAS: NOVEL ACTORS OF WNT SIGNALING PATHWAY IN LUNG CANCER PROGRESSION [J].
Alimohammadi, Mina ;
Gholinezhad, Yasaman ;
Mousavi, Vahide ;
Kahkesh, Samaneh ;
Rezaee, Malihe ;
Yaghoobi, Alireza ;
Mafi, Alireza ;
Araghi, Mahmood .
EXCLI JOURNAL, 2023, 22 :645-669
[3]   Non-Coding RNA as Biomarkers and Their Role in the Pathogenesis of Gastric Cancer-A Narrative Review [J].
Bakinowska, Estera ;
Kielbowski, Kajetan ;
Skorka, Patryk ;
Dach, Aleksandra ;
Olejnik-Wojciechowska, Joanna ;
Szwedkowicz, Agata ;
Pawlik, Andrzej .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2024, 25 (10)
[4]   TelNet - a database for human and yeast genes involved in telomere maintenance [J].
Braun, Delia M. ;
Chung, Inn ;
Kepper, Nick ;
Deeg, Katharina I. ;
Rippe, Karsten .
BMC GENETICS, 2018, 19
[5]  
Bray F, 2018, CA-CANCER J CLIN, V68, P394, DOI [10.3322/caac.21609, 10.3322/caac.21492]
[6]   Mechanisms of Disease: Telomere Diseases. [J].
Calado, Rodrigo T. ;
Young, Neal S. .
NEW ENGLAND JOURNAL OF MEDICINE, 2009, 361 (24) :2353-2365
[7]  
Chen BB, 2018, METHODS MOL BIOL, V1711, P243, DOI 10.1007/978-1-4939-7493-1_12
[8]   Telomere-related prognostic biomarkers for survival assessments in pancreatic cancer [J].
Chen, Shengyang ;
Hu, Shuiquan ;
Zhou, Baizhong ;
Cheng, Bingbing ;
Tong, Hao ;
Su, Dongchao ;
Li, Xiaoyong ;
Chen, Yanjun ;
Zhang, Genhao .
SCIENTIFIC REPORTS, 2023, 13 (01)
[9]   Identification and validation of telomerase related lncRNAs signature to predict prognosis and tumor immunotherapy response in bladder cancer [J].
Chen, Xiaoxu ;
Qin, Zheng ;
Zhu, Xiao ;
Wang, Lili ;
Li, Changying ;
Wang, Haitao .
SCIENTIFIC REPORTS, 2023, 13 (01)
[10]   Dendritic cell subsets in T cell programming: location dictates function [J].
Eisenbarth, S. C. .
NATURE REVIEWS IMMUNOLOGY, 2019, 19 (02) :89-103