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Optimisation of silane chemistry with machine learning and molecular dynamics
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作者:

Bhesania, Abhishek S.
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机构:
Univ Delaware, Ctr Composite Mat, Newark, DE 19716 USA Univ Delaware, Ctr Composite Mat, Newark, DE 19716 USA

Sirk, Timothy W.
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机构:
US Army DEVCOM Army Res Lab, Aberdeen Proving Ground, MD USA Univ Delaware, Ctr Composite Mat, Newark, DE 19716 USA

Rinderspacher, Berend C.
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机构:
US Army DEVCOM Army Res Lab, Aberdeen Proving Ground, MD USA Univ Delaware, Ctr Composite Mat, Newark, DE 19716 USA

Benvenuto, Matthew
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机构:
Univ Delaware, Ctr Composite Mat, Newark, DE 19716 USA Univ Delaware, Ctr Composite Mat, Newark, DE 19716 USA

Kubota, Munetaka
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h-index: 0
机构:
Univ Delaware, Ctr Composite Mat, Newark, DE 19716 USA Univ Delaware, Ctr Composite Mat, Newark, DE 19716 USA

Chowdhury, Sanjib C.
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h-index: 0
机构:
Univ Delaware, Ctr Composite Mat, Newark, DE 19716 USA Univ Delaware, Ctr Composite Mat, Newark, DE 19716 USA

Gillespie Jr, John W.
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h-index: 0
机构:
Univ Delaware, Ctr Composite Mat, Newark, DE 19716 USA Univ Delaware, Ctr Composite Mat, Newark, DE 19716 USA
机构:
[1] Univ Delaware, Ctr Composite Mat, Newark, DE 19716 USA
[2] US Army DEVCOM Army Res Lab, Aberdeen Proving Ground, MD USA
关键词:
Silane;
molecular dynamics;
machine learning;
REAXFF;
SIMULATIONS;
SMILES;
D O I:
10.1080/08927022.2025.2470804
中图分类号:
O64 [物理化学(理论化学)、化学物理学];
学科分类号:
070304 ;
081704 ;
摘要:
Among the numerous silane chemistries in commercial use and literature, only a few are well-parameterised and understood. This study presents a systematic approach using molecular dynamics (MD) and machine learning to rank and identify molecules with optimal mechanical strengths. MD simulations were conducted on silane molecules of varying functionalities and molecular weights to assess peak force performance in Mode I. The systems comprised a single silane molecule bonded to a glass surface through one or two bonds in either extended or relaxed configurations. Based on bond failure mechanisms, silane molecules were classified into three failure categories: (1) Silicon-Oxygen/Silicon-Carbon scission, (2) Nitrogen-Carbon scission, and (3) Oxygen-Carbon scission. In relaxed configurations, non-bonded interactions between silane molecules and the glass surface contributed significantly to energy absorption, with about 25% of total energy utilised to overcome these interactions. A machine learning approach was employed to predict peak forces for over 84,000 molecules by leveraging parameters from MD simulations. A Variational Autoencoder was used to reduce the molecular structure information to a low-dimensional, physically-informed space, followed by a quantile random forest regression model to predict the peak force performance for the broader set of silane molecules.
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页码:229 / 241
页数:13
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[1]
Randomized SMILES strings improve the quality of molecular generative models
[J].
Arus-Pous, Josep
;
Johansson, Simon Viet
;
Prykhodko, Oleksii
;
Bjerrum, Esben Jannik
;
Tyrchan, Christian
;
Reymond, Jean-Louis
;
Chen, Hongming
;
Engkvist, Ola
.
JOURNAL OF CHEMINFORMATICS,
2019, 11 (01)

Arus-Pous, Josep
论文数: 0 引用数: 0
h-index: 0
机构:
AstraZeneca Gothenburg, R&D, Discovery Sci, Hit Discovery, Molndal, Sweden
Univ Bern, Dept Chem & Biochem, Freiestr 3, CH-3012 Bern, Switzerland AstraZeneca Gothenburg, R&D, Discovery Sci, Hit Discovery, Molndal, Sweden

Johansson, Simon Viet
论文数: 0 引用数: 0
h-index: 0
机构:
AstraZeneca Gothenburg, R&D, Discovery Sci, Hit Discovery, Molndal, Sweden AstraZeneca Gothenburg, R&D, Discovery Sci, Hit Discovery, Molndal, Sweden

Prykhodko, Oleksii
论文数: 0 引用数: 0
h-index: 0
机构:
AstraZeneca Gothenburg, R&D, Discovery Sci, Hit Discovery, Molndal, Sweden AstraZeneca Gothenburg, R&D, Discovery Sci, Hit Discovery, Molndal, Sweden

Bjerrum, Esben Jannik
论文数: 0 引用数: 0
h-index: 0
机构:
AstraZeneca Gothenburg, R&D, Discovery Sci, Hit Discovery, Molndal, Sweden AstraZeneca Gothenburg, R&D, Discovery Sci, Hit Discovery, Molndal, Sweden

Tyrchan, Christian
论文数: 0 引用数: 0
h-index: 0
机构:
AstraZeneca Gothenburg, R&D, Med Chem, BioPharmaceut Early RIA, Molndal, Sweden AstraZeneca Gothenburg, R&D, Discovery Sci, Hit Discovery, Molndal, Sweden

Reymond, Jean-Louis
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Bern, Dept Chem & Biochem, Freiestr 3, CH-3012 Bern, Switzerland AstraZeneca Gothenburg, R&D, Discovery Sci, Hit Discovery, Molndal, Sweden

Chen, Hongming
论文数: 0 引用数: 0
h-index: 0
机构:
AstraZeneca Gothenburg, R&D, Discovery Sci, Hit Discovery, Molndal, Sweden AstraZeneca Gothenburg, R&D, Discovery Sci, Hit Discovery, Molndal, Sweden

Engkvist, Ola
论文数: 0 引用数: 0
h-index: 0
机构:
AstraZeneca Gothenburg, R&D, Discovery Sci, Hit Discovery, Molndal, Sweden AstraZeneca Gothenburg, R&D, Discovery Sci, Hit Discovery, Molndal, Sweden
[2]
Polymers for Extreme Conditions Designed Using Syntax-Directed Variational Autoencoders
[J].
Batra, Rohit
;
Dai, Hanjun
;
Tran Doan Huan
;
Chen, Lihua
;
Kim, Chiho
;
Gutekunst, Will R.
;
Song, Le
;
Ramprasad, Rampi
.
CHEMISTRY OF MATERIALS,
2020, 32 (24)
:10489-10500

Batra, Rohit
论文数: 0 引用数: 0
h-index: 0
机构:
Georgia Inst Technol, Sch Mat Sci & Engn, Atlanta, GA 30332 USA
Argonne Natl Lab, Ctr Nanoscale Mat, Lemont, IL 60439 USA Georgia Inst Technol, Computat Sci & Engn, Atlanta, GA 30332 USA

Dai, Hanjun
论文数: 0 引用数: 0
h-index: 0
机构:
Georgia Inst Technol, Computat Sci & Engn, Atlanta, GA 30332 USA Georgia Inst Technol, Computat Sci & Engn, Atlanta, GA 30332 USA

Tran Doan Huan
论文数: 0 引用数: 0
h-index: 0
机构:
Georgia Inst Technol, Sch Mat Sci & Engn, Atlanta, GA 30332 USA Georgia Inst Technol, Computat Sci & Engn, Atlanta, GA 30332 USA

Chen, Lihua
论文数: 0 引用数: 0
h-index: 0
机构:
Georgia Inst Technol, Sch Mat Sci & Engn, Atlanta, GA 30332 USA Georgia Inst Technol, Computat Sci & Engn, Atlanta, GA 30332 USA

Kim, Chiho
论文数: 0 引用数: 0
h-index: 0
机构:
Georgia Inst Technol, Sch Mat Sci & Engn, Atlanta, GA 30332 USA Georgia Inst Technol, Computat Sci & Engn, Atlanta, GA 30332 USA

Gutekunst, Will R.
论文数: 0 引用数: 0
h-index: 0
机构:
Georgia Inst Technol, Sch Chem & Biochem, Atlanta, GA 30332 USA Georgia Inst Technol, Computat Sci & Engn, Atlanta, GA 30332 USA

Song, Le
论文数: 0 引用数: 0
h-index: 0
机构:
Georgia Inst Technol, Computat Sci & Engn, Atlanta, GA 30332 USA Georgia Inst Technol, Computat Sci & Engn, Atlanta, GA 30332 USA

Ramprasad, Rampi
论文数: 0 引用数: 0
h-index: 0
机构:
Georgia Inst Technol, Sch Mat Sci & Engn, Atlanta, GA 30332 USA Georgia Inst Technol, Computat Sci & Engn, Atlanta, GA 30332 USA
[3]
Latent Models of Molecular Dynamics Data: Automatic Order Parameter Generation for Peptide Fibrillization
[J].
Charest, Nathaniel
;
Tro, Michael
;
Bowers, Michael T.
;
Shea, Joan-Emma
.
JOURNAL OF PHYSICAL CHEMISTRY B,
2020, 124 (37)
:8012-8022

Charest, Nathaniel
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA

Tro, Michael
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA

Bowers, Michael T.
论文数: 0 引用数: 0
h-index: 0
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Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA

Shea, Joan-Emma
论文数: 0 引用数: 0
h-index: 0
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Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA Univ Calif Santa Barbara, Dept Chem & Biochem, Santa Barbara, CA 93106 USA
[4]
Exploration of V-Cr-Fe-Co-Ni high-entropy alloys with high yield strength: A combination of machine learning and molecular dynamics simulation
[J].
Chen, Lu
;
Jarlov, Asker
;
Seet, Hang Li
;
Nai, Mui Ling Sharon
;
Li, Yefei
;
Zhou, Kun
.
COMPUTATIONAL MATERIALS SCIENCE,
2023, 217

Chen, Lu
论文数: 0 引用数: 0
h-index: 0
机构:
Xi An Jiao Tong Univ, State Key Lab Mech Behav Mat, Xian 710049, Peoples R China
Nanyang Technol Univ, Sch Mech & Aerosp Engn, 50 Nanyang Ave, Singapore 639798, Singapore Xi An Jiao Tong Univ, State Key Lab Mech Behav Mat, Xian 710049, Peoples R China

Jarlov, Asker
论文数: 0 引用数: 0
h-index: 0
机构:
Nanyang Technol Univ, Sch Mech & Aerosp Engn, 50 Nanyang Ave, Singapore 639798, Singapore
Singapore Inst Mfg Technol, Addit Mfg Div, 5 Cleantech Loop,01-01 Cleantech Two Block B, Singapore 636732, Singapore Xi An Jiao Tong Univ, State Key Lab Mech Behav Mat, Xian 710049, Peoples R China

Seet, Hang Li
论文数: 0 引用数: 0
h-index: 0
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Nai, Mui Ling Sharon
论文数: 0 引用数: 0
h-index: 0
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Singapore Inst Mfg Technol, Addit Mfg Div, 5 Cleantech Loop,01-01 Cleantech Two Block B, Singapore 636732, Singapore Xi An Jiao Tong Univ, State Key Lab Mech Behav Mat, Xian 710049, Peoples R China

Li, Yefei
论文数: 0 引用数: 0
h-index: 0
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Xi An Jiao Tong Univ, State Key Lab Mech Behav Mat, Xian 710049, Peoples R China Xi An Jiao Tong Univ, State Key Lab Mech Behav Mat, Xian 710049, Peoples R China

Zhou, Kun
论文数: 0 引用数: 0
h-index: 0
机构:
Nanyang Technol Univ, Sch Mech & Aerosp Engn, 50 Nanyang Ave, Singapore 639798, Singapore Xi An Jiao Tong Univ, State Key Lab Mech Behav Mat, Xian 710049, Peoples R China
[5]
Predicting the Properties of High-Performance Epoxy Resin by Machine Learning Using Molecular Dynamics Simulations
[J].
Choi, Joohee
;
Kang, Haisu
;
Lee, Ji Hee
;
Kwon, Sung Hyun
;
Lee, Seung Geol
.
NANOMATERIALS,
2022, 12 (14)

论文数: 引用数:
h-index:
机构:

Kang, Haisu
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Chem & Biomol Engn, Urbana, IL 61801 USA Pusan Natl Univ, Sch Chem Engn, Busan 46241, South Korea

Lee, Ji Hee
论文数: 0 引用数: 0
h-index: 0
机构:
Pusan Natl Univ, Sch Chem Engn, Busan 46241, South Korea Pusan Natl Univ, Sch Chem Engn, Busan 46241, South Korea

论文数: 引用数:
h-index:
机构:

论文数: 引用数:
h-index:
机构:
[6]
Strain-rate dependent mixed-mode traction laws for glass fiber-epoxy interphase using molecular dynamics simulations
[J].
Chowdhury, Sanjib C.
;
Gillespie Jr, John W.
.
COMPOSITES PART B-ENGINEERING,
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Chowdhury, Sanjib C.
论文数: 0 引用数: 0
h-index: 0
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Univ Delaware, Ctr Composite Mat UD CCM, Newark, DE 19716 USA Univ Delaware, Ctr Composite Mat UD CCM, Newark, DE 19716 USA

Gillespie Jr, John W.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Delaware, Ctr Composite Mat UD CCM, Newark, DE 19716 USA
Univ Delaware, Dept Mat Sci & Engn, Newark, DE 19716 USA
Univ Delaware, Dept Civil & Environm Engn, Newark, DE 19716 USA
Univ Delaware, Dept Mech Engn, Newark, DE 19716 USA Univ Delaware, Ctr Composite Mat UD CCM, Newark, DE 19716 USA
[7]
Strain-rate dependent mode I cohesive traction laws for glass fiber-epoxy interphase using molecular dynamics simulations
[J].
Chowdhury, Sanjib C.
;
Gillespie, John W., Jr.
.
COMPOSITES PART B-ENGINEERING,
2022, 237

Chowdhury, Sanjib C.
论文数: 0 引用数: 0
h-index: 0
机构:
Ctr Composite Mat UD CCM, Newark, DE 19716 USA Ctr Composite Mat UD CCM, Newark, DE 19716 USA

Gillespie, John W., Jr.
论文数: 0 引用数: 0
h-index: 0
机构:
Ctr Composite Mat UD CCM, Newark, DE 19716 USA
Dept Mat Sci & Engn, Newark, DE USA
Dept Civil & Environm Engn, Newark, DE USA
Dept Mech Engn, Newark, DE USA
Univ Delaware, Dept Elect & Comp Engn, Newark, DE 19716 USA Ctr Composite Mat UD CCM, Newark, DE 19716 USA
[8]
Glass fiber-epoxy interactions in the presence of silane: A molecular dynamics study
[J].
Chowdhury, Sanjib C.
;
Prosser, Riley
;
Sirk, Timothy W.
;
Elder, Robert M.
;
Gillespie, John W., Jr.
.
APPLIED SURFACE SCIENCE,
2021, 542

Chowdhury, Sanjib C.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Delaware, Ctr Composite Mat UD CCM, Newark, DE 19716 USA Univ Delaware, Ctr Composite Mat UD CCM, Newark, DE 19716 USA

Prosser, Riley
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Delaware, Ctr Composite Mat UD CCM, Newark, DE 19716 USA Univ Delaware, Ctr Composite Mat UD CCM, Newark, DE 19716 USA

Sirk, Timothy W.
论文数: 0 引用数: 0
h-index: 0
机构:
US Army Res Lab, Polymers Branch, Aberdeen Proving Ground, MD 21005 USA Univ Delaware, Ctr Composite Mat UD CCM, Newark, DE 19716 USA

Elder, Robert M.
论文数: 0 引用数: 0
h-index: 0
机构:
US Army Res Lab, Polymers Branch, Aberdeen Proving Ground, MD 21005 USA
US FDA, Ctr Devices & Radiol Hlth, Silver Spring, MD 20993 USA Univ Delaware, Ctr Composite Mat UD CCM, Newark, DE 19716 USA

Gillespie, John W., Jr.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Delaware, Ctr Composite Mat UD CCM, Newark, DE 19716 USA
Univ Delaware, Dept Mat Sci & Engn, Newark, DE 19716 USA
Univ Delaware, Dept Civil & Environm Engn, Newark, DE 19716 USA
Univ Delaware, Dept Mech Engn, Newark, DE 19716 USA
Univ Delaware, Dept Elect & Comp Engn, Newark, DE 19716 USA Univ Delaware, Ctr Composite Mat UD CCM, Newark, DE 19716 USA
[9]
Molecular dynamics simulations of the structure and mechanical properties of silica glass using ReaxFF
[J].
Chowdhury, Sanjib C.
;
Haque, Bazle Z.
;
Gillespie, John W., Jr.
.
JOURNAL OF MATERIALS SCIENCE,
2016, 51 (22)
:10139-10159

Chowdhury, Sanjib C.
论文数: 0 引用数: 0
h-index: 0
机构:
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Haque, Bazle Z.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Delaware, Ctr Composite Mat UD CCM, Newark, DE 19716 USA
Univ Delaware, Dept Mech Engn, Newark, DE 19716 USA Univ Delaware, Ctr Composite Mat UD CCM, Newark, DE 19716 USA

Gillespie, John W., Jr.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Delaware, Ctr Composite Mat UD CCM, Newark, DE 19716 USA
Univ Delaware, Dept Mat Sci & Engn, Newark, DE 19716 USA
Univ Delaware, Dept Civil & Environm Engn, Newark, DE 19716 USA
Univ Delaware, Dept Mech Engn, Newark, DE 19716 USA Univ Delaware, Ctr Composite Mat UD CCM, Newark, DE 19716 USA
[10]
Reactive Molecular Dynamics Simulations of the Silanization of Silica Substrates by Methoxysilanes and Hydroxysilanes
[J].
Deetz, Joshua D.
;
Quynh Ngo
;
Faller, Roland
.
LANGMUIR,
2016, 32 (28)
:7045-7055

Deetz, Joshua D.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Davis, Dept Chem Engn, Davis, CA 95616 USA
Shanghai Jiao Tong Univ, Dept Chem & Chem Engn, Shanghai 200240, Peoples R China Univ Calif Davis, Dept Chem Engn, Davis, CA 95616 USA

Quynh Ngo
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Davis, Dept Chem Engn, Davis, CA 95616 USA Univ Calif Davis, Dept Chem Engn, Davis, CA 95616 USA

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论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Davis, Dept Chem Engn, Davis, CA 95616 USA Univ Calif Davis, Dept Chem Engn, Davis, CA 95616 USA