Evolution takes multiple paths to evolvability when facing environmental change

被引:2
作者
Kumawat, Bhaskar [1 ]
Lalejini, Alexander [1 ,2 ,3 ]
Acosta, Monica M. [1 ,2 ]
Zaman, Luis [1 ,2 ]
机构
[1] Univ Michigan, Dept Ecol & Evolutionary Biol, Ann Arbor, MI 48109 USA
[2] Univ Michigan, Ctr Study Complex Syst, Ann Arbor, MI 48109 USA
[3] Grand Valley State Univ, Sch Comp, Allendale, MI 49401 USA
关键词
evolvability; mutation rate; digital evolution; fitness landscape; RAPID EVOLUTION; GENETIC-VARIATION; CLIMATE-CHANGE; ADAPTATION; MUTATION; ROBUSTNESS; RNA; TOPOLOGY;
D O I
10.1073/pnas.2413930121
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Life at all scales is surprisingly effective at exploiting new opportunities, as demonstrated by the rapid emergence of antimicrobial resistance and novel pathogens. How populations acquire this level of evolvability and the various ways it aids survival are major open questions with direct implications for human health. Here, we use digital evolution to show that changing environments facilitate the simultaneous evolution of high mutation rates and a distribution of mutational effects skewed toward beneficial phenotypes. The evolved mutational neighborhoods allow rapid adaptation to previously encountered environments, whereas higher mutation rates aid adaptation to completely new environmental conditions. By precisely tracking evolving lineages and the phenotypes of their mutants, we show that evolving populations localize on phenotypic boundaries between distinct regions of genotype space. Our results demonstrate how evolution shapes multiple determinants of evolvability concurrently, fine-tuning a population's adaptive responses to unpredictable or recurrent environmental shifts.
引用
收藏
页数:10
相关论文
共 76 条
[1]   Structural properties of genotype-phenotype maps [J].
Ahnert, S. E. .
JOURNAL OF THE ROYAL SOCIETY INTERFACE, 2017, 14 (132)
[2]   Unified reduction principle for the evolution of mutation, migration, and recombination [J].
Altenberg, Lee ;
Liberman, Uri ;
Feldman, Marcus W. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2017, 114 (12) :E2392-E2400
[3]  
[Anonymous], 2018, R LANG ENV STAT COMP
[4]  
Bashor L, 2021, P NATL ACAD SCI USA, V118, DOI [10.1101/2021.03.05.434135, 10.1073/pnas.2105253118]
[5]   Evolution of evolvability via adaptation of mutation rates [J].
Bedau, MA ;
Packard, NH .
BIOSYSTEMS, 2003, 69 (2-3) :143-162
[6]   Climate change - Evolutionary response to rapid climate change [J].
Bradshaw, William E. ;
Holzapfel, Christina M. .
SCIENCE, 2006, 312 (5779) :1477-1478
[7]  
Bryson David, 2021, Zenodo, DOI 10.5281/ZENODO.5068026
[8]   The contribution of evolvability to the eco-evolutionary dynamics of competing species [J].
Bukkuri, Anuraag ;
Pienta, Kenneth J. ;
Amend, Sarah R. ;
Austin, Robert H. ;
Hammarlund, Emma U. ;
Brown, Joel S. .
ECOLOGY AND EVOLUTION, 2023, 13 (10)
[9]   Evolvability of an RNA virus is determined by its mutational neighbourhood [J].
Burch, CL ;
Chao, L .
NATURE, 2000, 406 (6796) :625-628
[10]   Mixed strain pathogen populations accelerate the evolution of antibiotic resistance in patients [J].
Caballero, Julio Diaz ;
Wheatley, Rachel M. ;
Kapel, Natalia ;
Lopez-Causape, Carla ;
van der Schalk, Thomas ;
Quinn, Angus ;
Shaw, Liam P. ;
Ogunlana, Lois ;
Recanatini, Claudia ;
Xavier, Basil Britto ;
Timbermont, Leen ;
Kluytmans, Jan ;
Ruzin, Alexey ;
Esser, Mark ;
Malhotra-Kumar, Surbhi ;
Oliver, Antonio ;
MacLean, R. Craig .
NATURE COMMUNICATIONS, 2023, 14 (01)