Advancing non-target analysis of emerging environmental contaminants with machine learning: Current status and future implications

被引:4
作者
Canchola, Alexa [1 ,2 ]
Tran, Lillian N. [1 ]
Woo, Wonsik [1 ]
Tian, Linhui [2 ]
Lin, Ying-Hsuan [1 ,2 ]
Chou, Wei-Chun [1 ,2 ]
机构
[1] Univ Calif Riverside, Environm Toxicol Grad Program, Riverside, CA 92521 USA
[2] Univ Calif Riverside, Coll Nat & Agr Sci, Dept Environm Sci, Riverside, CA 92521 USA
关键词
Non-target analysis; High-resolution mass spectrometry; Machine learning; Risk assessment; Emerging environmental contaminants; Computational modelling; MASS-SPECTROMETRY DATA; OPEN-SOURCE SOFTWARE; GAS-CHROMATOGRAPHY; EXPERT-SYSTEM; RESOLUTION; METABOLOMICS; STRATEGIES; PREDICTION; QUANTIFICATION; IDENTIFICATION;
D O I
10.1016/j.envint.2025.109404
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
Emerging environmental contaminants (EECs) such as pharmaceuticals, pesticides, and industrial chemicals pose significant challenges for detection and identification due to their structural diversity and lack of analytical standards. Traditional targeted screening methods often fail to detect these compounds, making non-target analysis (NTA) using high-resolution mass spectrometry (HRMS) essential for identifying unknown or suspected contaminants. However, interpreting the vast datasets generated by HRMS is complex and requires advanced data processing techniques. Recent advancements in machine learning (ML) models offer great potential for enhancing NTA applications. As such, we reviewed key developments, including optimizing workflows using computational tools, improved chemical structure identification, advanced quantification methods, and enhanced toxicity prediction capabilities. It also discusses challenges and future perspectives in the field, such as refining ML tools for complex mixtures, improving inter-laboratory validation, and further integrating computational models into environmental risk assessment frameworks. By addressing these challenges, ML-assisted NTA can significantly enhance the detection, quantification, and evaluation of EECs, ultimately contributing to more effective environmental monitoring and public health protection.
引用
收藏
页数:15
相关论文
共 124 条
[1]   Extracting Structural Information from Physicochemical Property Measurements Using Machine Learning-A New Approach for Structure Elucidation in Non-targeted Analysis [J].
Abrahamsson, Dimitri ;
Brueck, Christopher L. ;
Prasse, Carsten ;
Lambropoulou, Dimitra A. ;
Koronaiou, Lelouda-Athanasia ;
Wang, Miaomiao ;
Park, June-Soo ;
Woodruff, Tracey J. .
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2023, 57 (40) :14827-14838
[2]   In Silico Structure Predictions for Non-targeted Analysis: From Physicochemical Properties to Molecular Structures [J].
Abrahamsson, Dimitri ;
Siddharth, Adi ;
Young, Thomas M. ;
Sirota, Marina ;
Park, June-Soo ;
Martin, Jonathan W. ;
Woodruff, Tracey J. .
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2022, 33 (07) :1134-1147
[3]  
Adusumilli R., 2017, Proteomics: Methods and Protocols
[4]   Comparison of two algorithmic data processing strategies for metabolic fingerprinting by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry [J].
Almstetter, Martin F. ;
Appel, Inka J. ;
Dettmer, Katja ;
Gruber, Michael A. ;
Oefner, Peter J. .
JOURNAL OF CHROMATOGRAPHY A, 2011, 1218 (39) :7031-7038
[5]   Low Data Drug Discovery with One-Shot Learning [J].
Altae-Tran, Han ;
Ramsundar, Bharath ;
Pappu, Aneesh S. ;
Pande, Vijay .
ACS CENTRAL SCIENCE, 2017, 3 (04) :283-293
[6]   NORMAN digital sample freezing platform: A European virtual platform to exchange liquid chromatography high resolution-mass spectrometry data and screen suspects in "digitally frozen" environmental samples [J].
Alygizakis, Nikiforos A. ;
Oswald, Peter ;
Thomaidis, Nikolaos S. ;
Schymanski, Emma L. ;
Aalizadeh, Reza ;
Schulze, Tobias ;
Oswaldova, Martina ;
Slobodnik, Jaroslav .
TRAC-TRENDS IN ANALYTICAL CHEMISTRY, 2019, 115 :129-137
[7]   Exploring the Potential of a Global Emerging Contaminant Early Warning Network through the Use of Retrospective Suspect Screening with High-Resolution Mass Spectrometry [J].
Alyzakis, Nikiforos A. ;
Samanipour, Saer ;
Hollender, Juliane ;
Ibanez, Maria ;
Kaserzon, Sarit ;
Kokkali, Varvara ;
van Leerdam, Jan A. ;
Mueller, Jochen F. ;
Pijnappels, Martijn ;
Reid, Malcolm J. ;
Schymanski, Emma L. ;
Slobodnik, Jaroslav ;
Thomaidis, Nikolaos S. ;
Thomas, Kevin V. .
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2018, 52 (09) :5135-5144
[8]   Machine Learning-Based Hazard-Driven Prioritization of Features in Nontarget Screening of Environmental High-Resolution Mass Spectrometry Data [J].
Arturi, Katarzyna ;
Hollender, Juliane .
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2023, 57 (46) :18067-18079
[9]   Prediction of plant secondary metabolic pathways using deep transfer learning [J].
Bao, Han ;
Zhao, Jinhui ;
Zhao, Xinjie ;
Zhao, Chunxia ;
Lu, Xin ;
Xu, Guowang .
BMC BIOINFORMATICS, 2023, 24 (01)
[10]   Deep learning for tumor classification in imaging mass spectrometry [J].
Behrmann, Jens ;
Etmann, Christian ;
Boskamp, Tobias ;
Casadonte, Rita ;
Kriegsmann, Joerg ;
Maass, Peter .
BIOINFORMATICS, 2018, 34 (07) :1215-1223