Animal and bacterial viruses share conserved mechanisms of immune evasion

被引:4
作者
Hobbs, Samuel J. [1 ,2 ]
Nomburg, Jason [3 ,4 ,5 ]
Doudna, Jennifer A. [3 ,4 ,5 ,6 ,7 ,8 ,9 ]
Kranzusch, Philip J. [1 ,2 ]
机构
[1] Harvard Med Sch, Dept Microbiol, Boston, MA 02115 USA
[2] Dana Farber Canc Inst, Dept Canc Immunol & Virol, Boston, MA 02115 USA
[3] Gladstone UCSF Inst Data Sci & Biotechnol, San Francisco, CA 94158 USA
[4] Univ Calif Berkeley, Dept Mol & Cell Biol, Berkeley, CA 94720 USA
[5] Univ Calif Berkeley, Innovat Genom Inst, Berkeley, CA 94720 USA
[6] Univ Calif Berkeley, Calif Inst Quantitat Biosci, Berkeley, CA 94720 USA
[7] Univ Calif Berkeley, Howard Hughes Med Inst, Berkeley, CA 94720 USA
[8] Lawrence Berkeley Natl Lab, Mol Biophys & Integrated Bioimaging Div, Berkeley, CA 94720 USA
[9] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA
关键词
CYCLIC GMP-AMP; CRYSTAL-STRUCTURE; DNA SENSOR; 2ND-MESSENGER; DINUCLEOTIDE; DOMAIN; PHOSPHODIESTERASE; RECOGNITION; PROTEINS; GENOME;
D O I
10.1016/j.cell.2024.07.057
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Animal and bacterial cells sense and defend against viral infections using evolutionarily conserved antiviral signaling pathways. Here, we show that viruses overcome host signaling using mechanisms of immune evasion that are directly shared across the eukaryotic and prokaryotic kingdoms of life. Structures of animal poxvirus proteins that inhibit host cGAS-STING signaling demonstrate architectural and catalytic active-site homology shared with bacteriophage Acb1 proteins, which inactivate CBASS anti-phage defense. In bacteria, phage Acb1 proteins are viral enzymes that degrade host cyclic nucleotide immune signals. Structural comparisons of poxvirus protein-2'3'-cGAMP ' 3 '-cGAMP and phage Acb1-3'3'-cGAMP ' 3 '-cGAMP complexes reveal a universal mechanism of host nucleotide immune signal degradation and explain kingdom-specific additions that enable viral adaptation. Chimeric bacteriophages confirm that animal poxvirus proteins are sufficient to evade immune signaling in bacteria. Our findings identify a mechanism of immune evasion conserved between animal and bacterial viruses and define shared rules that explain host-virus interactions across multiple kingdoms of life.
引用
收藏
页码:5530 / 5539.e8
页数:19
相关论文
共 69 条
[1]   cGAS produces a 2′-5′-linked cyclic dinucleotide second messenger that activates STING [J].
Ablasser, Andrea ;
Goldeck, Marion ;
Cavlar, Taner ;
Deimling, Tobias ;
Witte, Gregor ;
Roehl, Ingo ;
Hopfner, Karl-Peter ;
Ludwig, Janos ;
Hornung, Veit .
NATURE, 2013, 498 (7454) :380-+
[2]   Broad-spectrum CRISPR-Cas13a enables efficient phage genome editing [J].
Adler, Benjamin A. ;
Hessler, Tomas ;
Cress, Brady F. ;
Lahiri, Arushi ;
Mutalik, Vivek K. ;
Barrangou, Rodolphe ;
Banfield, Jillian ;
Doudna, Jennifer A. .
NATURE MICROBIOLOGY, 2022, 7 (12) :1967-+
[3]   Mutational escape from cellular immunity in viral hepatitis: variations on a theme [J].
Alizei, Elahe Salimi ;
Hofmann, Maike ;
Thimme, Robert ;
Neumann-Haefelin, Christoph .
CURRENT OPINION IN VIROLOGY, 2021, 50 :110-118
[4]   An anti-CRISPR viral ring nuclease subverts type III CRISPR immunity [J].
Athukoralage, Januka S. ;
McMahon, Stephen A. ;
Zhang, Changyi ;
Grueschow, Sabine ;
Graham, Shirley ;
Krupovic, Mart ;
Whitaker, Rachel J. ;
Gloster, Tracey M. ;
White, Malcolm F. .
NATURE, 2020, 577 (7791) :572-+
[5]   Accurate prediction of protein structures and interactions using a three-track neural network [J].
Baek, Minkyung ;
DiMaio, Frank ;
Anishchenko, Ivan ;
Dauparas, Justas ;
Ovchinnikov, Sergey ;
Lee, Gyu Rie ;
Wang, Jue ;
Cong, Qian ;
Kinch, Lisa N. ;
Schaeffer, R. Dustin ;
Millan, Claudia ;
Park, Hahnbeom ;
Adams, Carson ;
Glassman, Caleb R. ;
DeGiovanni, Andy ;
Pereira, Jose H. ;
Rodrigues, Andria V. ;
van Dijk, Alberdina A. ;
Ebrecht, Ana C. ;
Opperman, Diederik J. ;
Sagmeister, Theo ;
Buhlheller, Christoph ;
Pavkov-Keller, Tea ;
Rathinaswamy, Manoj K. ;
Dalwadi, Udit ;
Yip, Calvin K. ;
Burke, John E. ;
Garcia, K. Christopher ;
Grishin, Nick V. ;
Adams, Paul D. ;
Read, Randy J. ;
Baker, David .
SCIENCE, 2021, 373 (6557) :871-+
[6]   Prokaryotic viperins produce diverse antiviral molecules [J].
Bernheim, Aude ;
Millman, Adi ;
Ofir, Gal ;
Meitav, Gilad ;
Avraham, Carmel ;
Shomar, Helena ;
Rosenberg, Masha M. ;
Tal, Nir ;
Melamed, Sarah ;
Amitai, Gil ;
Sorek, Rotem .
NATURE, 2021, 589 (7840) :120-U230
[7]   Crystal structure of the C-terminal 2′,5′-phosphodiesterase domain of group A rotavirus protein VP3 [J].
Brandmann, Tobias ;
Jinek, Martin .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2015, 83 (05) :997-1002
[8]   The virus-induced cyclic dinucleotide 2'3'-c-di-GMP mediates STING-dependent antiviral immunity in Drosophila [J].
Cai, Hua ;
Li, Lihua ;
Slavik, Kailey M. ;
Huang, Jingxian ;
Yin, Ting ;
Ai, Xianlong ;
Hedelin, Lena ;
Haas, Gabrielle ;
Xiang, Zhangmin ;
Yang, Yunyun ;
Li, Xiaoyan ;
Chen, Yuqiang ;
Wei, Ziming ;
Deng, Huimin ;
Chen, Di ;
Jiao, Renjie ;
Martins, Nelson ;
Meignin, Carine ;
Kranzusch, Philip J. ;
Imler, Jean-Luc .
IMMUNITY, 2023, 56 (09) :1991-+
[9]   The IMG/M data management and analysis system v.7: content updates and new features [J].
Chen, I-Min A. ;
Chu, Ken ;
Palaniappan, Krishnaveni ;
Ratner, Anna ;
Huang, Jinghua ;
Huntemann, Marcel ;
Hajek, Patrick ;
Ritter, Stephan J. ;
Webb, Cody ;
Wu, Dongying ;
Varghese, Neha J. ;
Reddy, T. B. K. ;
Mukherjee, Supratim ;
Ovchinnikova, Galina ;
Nolan, Matt ;
Seshadri, Rekha ;
Roux, Simon ;
Visel, Axel ;
Woyke, Tanja ;
Eloe-Fadrosh, Emiley A. ;
Kyrpides, Nikos C. ;
Ivanova, Natalia N. .
NUCLEIC ACIDS RESEARCH, 2023, 51 (D1) :D723-D732
[10]   Cyclic GMP-AMP signalling protects bacteria against viral infection [J].
Cohen, Daniel ;
Melamed, Sarah ;
Millman, Adi ;
Shulman, Gabriela ;
Oppenheimer-Shaanan, Yaara ;
Kacen, Assaf ;
Doron, Shany ;
Amitai, Gil ;
Sorek, Rotem .
NATURE, 2019, 574 (7780) :691-+