Elucidating cardiomyocyte heterogeneity and maturation dynamics through integrated single-cell and spatial transcriptomics

被引:0
作者
Wang, Xiaoying [1 ,2 ,3 ]
Cao, Lizhi [1 ,4 ]
Chang, Rui [4 ]
Shen, Junwei [2 ]
Ma, Linlin [1 ]
Li, Yanfei [1 ]
机构
[1] Shanghai Univ Med & Hlth Sci, Affiliated Zhoupu Hosp, Shanghai, Peoples R China
[2] Tongji Univ, Sch Life Sci & Technol, Shanghai, Peoples R China
[3] Chinese Acad Sci, Inst Biophys, Beijing, Peoples R China
[4] Univ Shanghai Sci & Technol, Sch Hlth Sci & Engn, Shanghai, Peoples R China
基金
上海市自然科学基金;
关键词
GENE-EXPRESSION;
D O I
10.1016/j.isci.2024.111596
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The intricate development and functionality of the mammalian heart are influenced by the heterogeneous nature of cardiomyocytes (CMs). In this study, single-cell and spatial transcriptomics were utilized to analyze cells from neonatal mouse hearts, resulting in a comprehensive atlas delineating the transcriptional profiles of distinct CM subsets. A continuum of maturation states was elucidated, emphasizing a progressive developmental trajectory rather than discrete stages. This approach enabled the mapping of these states across various cardiac regions, illuminating the spatial organization of CM development and the influence of the cellular microenvironment. Notably, a subset of transitional CMs was identified, characterized by a transcriptional signature marking a pivotal maturation phase, presenting a promising target for therapeutic strategies aimed at enhancing cardiac regeneration. This atlas not only elucidates fundamental aspects of cardiac development but also serves as a valuable resource for advancing research into cardiac physiology and pathology, with significant implications for regenerative medicine.
引用
收藏
页数:18
相关论文
共 39 条
  • [1] Sarcomere maturation: function acquisition, molecular mechanism, and interplay with other organelles
    Ahmed, Razan E.
    Tokuyama, Takeshi
    Anzai, Tatsuya
    Chanthra, Nawin
    Uosaki, Hideki
    [J]. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2022, 377 (1864)
  • [2] A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart
    Asp, Michaela
    Giacomello, Stefania
    Larsson, Ludvig
    Wu, Chenglin
    Furth, Daniel
    Qian, Xiaoyan
    Wardell, Eva
    Custodio, Joaquin
    Reimegard, Johan
    Salmen, Fredrik
    Osterholm, Cecilia
    Stahl, Patrik L.
    Sundstrom, Erik
    Akesson, Elisabet
    Bergmann, Olaf
    Bienko, Magda
    Mansson-Broberg, Agneta
    Nilsson, Mats
    Sylven, Christer
    Lundeberg, Joakim
    [J]. CELL, 2019, 179 (07) : 1647 - +
  • [3] Cell type-specific inference of differential expression in spatial transcriptomics
    Cable, Dylan M.
    Murray, Evan
    Shanmugam, Vignesh
    Zhang, Simon
    Zou, Luli S.
    Diao, Michael
    Chen, Haiqi
    Macosko, Evan Z.
    Irizarry, Rafael A.
    Chen, Fei
    [J]. NATURE METHODS, 2022, 19 (09) : 1076 - +
  • [4] Robust decomposition of cell type mixtures in spatial transcriptomics
    Cable, Dylan M.
    Murray, Evan
    Zou, Luli S.
    Goeva, Aleksandrina
    Macosko, Evan Z.
    Chen, Fei
    Irizarry, Rafael A.
    [J]. NATURE BIOTECHNOLOGY, 2022, 40 (04) : 517 - +
  • [5] Multifaceted Spatial and Functional Zonation of Cardiac Cells in Adult Human Heart
    Chen, Liang
    Hua, Kui
    Zhang, Ningning
    Wang, Jingyu
    Meng, Jian
    Hu, Zhenliang
    Gao, Haoxiang
    Li, Fanhong
    Chen, Yang
    Ren, Jie
    Liu, Liyang
    Zhou, Qiming
    Gu, Jin
    Song, Jiangping
    Zhang, Xuegong
    Hu, Shengshou
    [J]. CIRCULATION, 2022, 145 (04) : 315 - 318
  • [6] Heart Regeneration with Engineered Myocardial Tissue
    Coulombe, Kareen L. K.
    Bajpai, Vivek K.
    Andreadis, Stelios T.
    Murry, Charles E.
    [J]. ANNUAL REVIEW OF BIOMEDICAL ENGINEERING, VOL 16, 2014, 16 : 1 - 28
  • [7] Single-Cell Resolution of Temporal Gene Expression during Heart Development
    DeLaughter, Daniel M.
    Bick, Alexander G.
    Wakimoto, Hiroko
    McKean, David
    Gorham, Joshua M.
    Kathiriya, Irian S.
    Hinson, John T.
    Homsy, Jason
    Gray, Jesse
    Pu, William
    Bruneau, Benoit G.
    Seidman, J. G.
    Seidman, Christine E.
    [J]. DEVELOPMENTAL CELL, 2016, 39 (04) : 480 - 490
  • [8] Single cell and lineage tracing studies reveal the impact of CD34+ cells on myocardial fibrosis during heart failure
    Du, Luping
    Sun, Xiaotong
    Gong, Hui
    Wang, Ting
    Jiang, Liujun
    Huang, Chengchen
    Xu, Xiaodong
    Li, Zhoubin
    Xu, Hongfei
    Ma, Liang
    Li, Weidong
    Chen, Ting
    Xu, Qingbo
    [J]. STEM CELL RESEARCH & THERAPY, 2023, 14 (01)
  • [9] Spatially organized cellular communities form the developing human heart
    Farah, Elie N.
    Hu, Robert K.
    Kern, Colin
    Zhang, Qingquan
    Lu, Ting-Yu
    Ma, Qixuan
    Tran, Shaina
    Zhang, Bo
    Carlin, Daniel
    Monell, Alexander
    Blair, Andrew P.
    Wang, Zilu
    Eschbach, Jacqueline
    Li, Bin
    Destici, Eugin
    Ren, Bing
    Evans, Sylvia M.
    Chen, Shaochen
    Zhu, Quan
    Chi, Neil C.
    [J]. NATURE, 2024, 627 (8005) : 854 - +
  • [10] Single-cell transcriptomic analysis identifies murine heart molecular features at embryonic and neonatal stages
    Feng, Wei
    Bais, Abha
    He, Haoting
    Rios, Cassandra
    Jiang, Shan
    Xu, Juan
    Chang, Cindy
    Kostka, Dennis
    Li, Guang
    [J]. NATURE COMMUNICATIONS, 2022, 13 (01)