New and efficient AS-PCR molecular marker for selection of coffee resistant to coffee leaf rust

被引:0
作者
de Almeida, Denia Pires [1 ]
Carneiro, Deisy Guimaraes [1 ]
Caixeta, Eveline Teixeira [1 ,2 ]
Alves, Danubia Rodrigues [1 ]
Zambolim, Laercio [1 ]
机构
[1] Univ Fed Vicosa, Inst Biotecnol Aplicada Agr, Vila Matoso 205, BR-36570000 Vicosa, MG, Brazil
[2] Empresa Brasileira Pesquisa Agr Embrapa, PqEB, Ave W3 Norte Final S-N, BR-70770901 Brasilia, DF, Brazil
来源
CROP BREEDING AND APPLIED BIOTECHNOLOGY | 2024年 / 24卷 / 04期
关键词
Coffee breeding; sustainable coffee; marker-assisted selection (MAS); QTL; Hemileia vastatrix; HEMILEIA-VASTATRIX; SOFTWARE;
D O I
10.1590/1984-70332024v24n4a47
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Coffee leaf rust, caused by Hemileia vastatrix, is the most important disease affecting Coffea arabica. The use of molecular markers through marker-assisted selection (MAS) is an effective approach to develop cultivars with multiple and durable resistance, which is economically and environmentally beneficial for this disease control. In this work, a new molecular marker based on allele-specific polymerase chain reaction (AS-PCR) associated with the quantitative trait locus (QTL) of the linkage group 5 (LG5), which confers resistance to races I, II and pathotype 001 of H. vastatrix, was developed. The CaRHv10-AS marker was validated in a segregating genetic mapping population of 247 F2 genotypes and demonstrated selection efficiency greater than 97% for genotypes with resistance to three races. Thus, this work provides a fast, robust, and affordable molecular marker for use in MAS, facilitating the development of coffee plants with multiple resistance and ensuring sustainable coffee production.
引用
收藏
页数:9
相关论文
共 38 条
[1]  
Alhudaib K, Ismail AM, First occurrence of coffee leaf rust caused by Hemileia vastatrix on coffee in Saudi Arabia, Microbiology Research, 15, pp. 164-173, (2024)
[2]  
Alkimim ER, Caixeta ET, Sousa TV, Pereira AA, Oliveira ACB, Zambolim L, Sakiyama NS, Marker-assisted selection provides arabica coffee with genes from other Coffea species targeting on multiple resistance to rust and coffee berry disease, Molecular Breeding, 37, (2017)
[3]  
Almeida DP, Caixeta ET, Moreira KF, Oliveira ACB, Pestana KN, Pereira AA, Rosado RDS, Zambolim L, Cruz CD, Marker-assisted pyramiding of multiple disease resistance genes in coffee genotypes (Coffea arabica), Agronomy, 11, (2021)
[4]  
Almeida DP, Castro ISL, Mendes TAO, Alves DR, Barka GD, Barreiros PRRM, Zambolim L, Sakiyama NS, Caixeta ET, Receptor-Like Kinase (RLK) as a candidate gene conferring resistance to Hemileia vastatrix in coffee, Scientia Agricola, 78, (2021)
[5]  
Alzate-Marin AL, Cervigni GDL, Moreira MA, Barros EG, Seleção assistida por marcadores moleculares visando ao desenvolvimento de plantas resistentes a doenças, com ênfase em feijoeiro e soja, Fitopatologia Brasileira, 30, pp. 333-342, (2005)
[6]  
Ariyoshi C, Sera GH, Rodrigues LMR, Carvalho FG, Shigueoka LH, Mendonca AES, Pereira CTM, Destefano SAL, Pereira LFP, Development and validation of an allele-specific marker for resistance to bacterial halo blight in Coffea arabica, Agronomy, 12, (2022)
[7]  
Barka GD, Caixeta ET, Ferreira SS, Zambolim L, In silico guided structural and functional analysis of genes with potential involvement in resistance to coffee leaf rust: A functional marker based approach, PloS ONE, 15, (2020)
[8]  
Bettencourt AJ, Junior Rodrigues, Clarke CJ, Macrae RJR, Principles and practice of coffee breeding for resistance to rust and other diseases, Coffee agronomy, pp. 199-234, (1988)
[9]  
Bui M, Liu Z, Simple allele-discriminating PCR for cost-effecand rapid genotyping and mapping, Plant Methods, 5, (2009)
[10]  
Capucho AS, Caixeta ET, Maciel-Zambolim E, Zambolim L, Herança da resistência do Híbrido de Timor UFV 443-03 à ferrugem-do-cafeeiro, Pesquisa Agropecuária Brasileira, 44, pp. 276-282, (2009)