N-phenethyl-2-(1H-1,2,3-triazol-1-yl)acetamide derivatives: Synthesis, crystal structure and molecular docking studies against SARS-CoV-2

被引:0
作者
Cedillo-Cruz, Alberto [1 ,2 ]
Villalobos-Lopez, Diana Cecilia [3 ]
Cruz, Abraham Kuri [4 ]
Aguilar, Maria Isabel [3 ]
Lara-Almazan, Nancy [5 ]
Martinez-Otero, Diego [1 ]
Cuevas-Yanez, Erick [1 ,2 ]
机构
[1] Univ Autonoma Estado Mexico, Ctr Conjunto Invest Quim Sustentable UAEM UNAM, Carretera Toluca Atlacomulco Km 14-5, Toluca 50200, Estado De Mexic, Mexico
[2] Univ Autonoma Estado Mexico, Fac Quim, Paseo Colon Esq Paseo Tollocan, Toluca 50120, Estado De Mexic, Mexico
[3] Univ Nacl Autonoma Mexico, Fac Quim, Dept Farm, Cd Univ, Ciudad De Mexico 04510, Mexico
[4] Natl Inst Stand & Technol NIST, Chem Sci Div, 100 Bur Dr, Gaithersburg, MD 20899 USA
[5] Inst Nacl Invest Nucl, Dept Forense Nucl & Quim Analit, Ocoyoacac 52750, Estado De Mexic, Mexico
关键词
SARS-CoV-2; inhibitors; Molecular docking; Triazole derivatives; Click chemistry; Crystal structure; FRAGMENTATION; INHIBITION; TRIAZOLES; PROTEASE;
D O I
10.1016/j.molstruc.2024.140167
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Novel N-phenethyl-2-(1H-1,2,3-triazol-1-yl)acetamide derivatives were synthesized via Copper(I)-catalyzed 1,3dipolar azide-alkyne cycloaddition, commonly known as CuAAC. These triazoles were then characterized using Nuclear Magnetic Resonance (NMR), Fourier Transform Infrared Spectroscopy (FTIR), and Mass Spectrometry (MS). The crystal structures of ten compounds were elucidated through single-crystal X-ray diffraction (SCXRD). Computational calculations, based on Density Functional Theory (DFT), were employed to optimize the molecular structures. The energy levels of the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) were also determined. Additionally, molecular docking studies revealed the binding interactions of the most potent triazole with the active sites of key molecular targets. The findings indicated that the newly synthesized triazoles exhibit promising inhibitory activity against SARS-CoV-2 proteases 3-chymotrypsin-like protease (3CL(pro)), papain-like protease (PLpro), and helicase, outperforming the cocrystallized ligand.
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页数:20
相关论文
共 57 条
[1]   1,2,3-Triazole-Benzofused Molecular Conjugates as Potential Antiviral Agents against SARS-CoV-2 Virus Variants [J].
Al-Humaidi, Jehan Y. ;
Shaaban, Marwa M. ;
Rezki, Nadjet ;
Aouad, Mohamed R. ;
Zakaria, Mohamed ;
Jaremko, Mariusz ;
Hagar, Mohamed ;
Elwakil, Bassma H. .
LIFE-BASEL, 2022, 12 (09)
[2]   TABLES OF BOND LENGTHS DETERMINED BY X-RAY AND NEUTRON-DIFFRACTION .1. BOND LENGTHS IN ORGANIC-COMPOUNDS [J].
ALLEN, FH ;
KENNARD, O ;
WATSON, DG ;
BRAMMER, L ;
ORPEN, AG ;
TAYLOR, R .
JOURNAL OF THE CHEMICAL SOCIETY-PERKIN TRANSACTIONS 2, 1987, (12) :S1-S19
[3]   Stereoselective synthesis and discovery of novel spirooxindolopyrrolidine engrafted indandione heterocyclic hybrids as antimycobacterial agents [J].
Arumugam, Natarajan ;
Almansour, Abdulrahman, I ;
Kumar, Raju Suresh ;
Krishna, Vagolu Siva ;
Sriram, Dharmarajan ;
Dege, Necmi .
BIOORGANIC CHEMISTRY, 2021, 110
[4]   Synthesis and biological evaluation of new benzimidazole-1,2,3-triazole hybrids as potential α-glucosidase inhibitors [J].
Asemanipoor, Nafise ;
Mohammadi-Khanaposhtani, Maryam ;
Moradi, Shahram ;
Vahidi, Mahbobeh ;
Asadi, Mehdi ;
Faramarzi, Mohammad Ali ;
Mahdavi, Mohammad ;
Biglar, Mahmood ;
Larijani, Bagher ;
Hamedifar, Haleh ;
Hajimiri, Mir Hamed .
BIOORGANIC CHEMISTRY, 2020, 95
[5]   Meldrum-Based-1H-1,2,3-Triazoles as Antidiabetic Agents: Synthesis, In Vitro α-Glucosidase Inhibition Activity, Molecular Docking Studies, and In Silico Approach [J].
Avula, Satya Kumar ;
Ullah, Saeed ;
Halim, Sobia Ahsan ;
Khan, Ajmal ;
Anwar, Muhammad U. ;
Csuk, Rene ;
Al-Harrasi, Ahmed ;
Rostami, Ali .
ACS OMEGA, 2023, 8 (28) :24901-24911
[6]   The SARS-coronavirus papain-like protease: Structure, function and inhibition by designed antiviral compounds [J].
Baez-Santos, Yahira M. ;
St John, Sarah E. ;
Mesecar, Andrew D. .
ANTIVIRAL RESEARCH, 2015, 115 :21-38
[7]   Synthesis and NMR Analysis of 1,4-Disubstituted 1,2,3-Triazoles Tethered to Pyridine, Pyrimidine, and Pyrazine Rings [J].
Bolje, Aljosa ;
Urankar, Damijana ;
Kosmrlj, Janez .
EUROPEAN JOURNAL OF ORGANIC CHEMISTRY, 2014, 2014 (36) :8167-8181
[8]   Exploration of cytotoxic potential and tubulin polymerization inhibition activity of cis-stilbene-1,2,3-triazole congeners [J].
Bora, Darshana ;
Samir, Khan Mehtab ;
Sharma, Anamika ;
Chilvery, Shrilekha ;
Bansod, Sapana ;
John, Stephy Elza ;
Ali Khan, Mursalim ;
Godugu, Chandraiah ;
Shankaraiah, Nagula .
RSC MEDICINAL CHEMISTRY, 2023, 14 (03) :482-490
[9]  
Cairo C., 2020, Patent No. [2020239512A1, 2020239512]
[10]   Quercetin-1,2,3-Triazole Hybrids as Multifunctional Anti-Alzheimer's Agents [J].
Carreiro, Elisabete P. ;
Costa, Ana R. ;
Antunes, Celia M. ;
Ernesto, Sofia ;
Pinto, Flavia ;
Rodrigues, Beatriz ;
Burke, Anthony J. .
MOLECULES, 2023, 28 (22)