Uncovering Potential Biomarkers and Constructing a Prediction Model Associated with Iron Metabolism in Parkinson's Disease

被引:1
作者
Cheng, Yan [1 ]
Zhai, Hongjiang
Liu, Yong
Yang, Yunzhou
Fang, Bo
Song, Mingxiang
Zhong, Ping [1 ,2 ]
机构
[1] Anhui Med Univ, Suzhou Hosp, Dept Neurol, 616 Bianyang Third Rd, Suzhou 234000, Anhui, Peoples R China
[2] Anhui Med Univ, Dept Neurol, Luan Hosp, Luan, Anhui, Peoples R China
关键词
Parkinson's disease; iron metabolism; risk score model; diagnosis; GENE-EXPRESSION; CLINICAL-DIAGNOSIS; R PACKAGE; PATHWAYS;
D O I
10.2147/NDT.S511671
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
Background: Parkinson's disease (PD) is a common neurodegenerative disorder. Iron metabolism abnormalities have been reported in PD patients and may contribute to disease pathogenesis. Our study aimed to explore key genes associated with iron metabolism in Methods: Three datasets and iron metabolism-related genes (IMRGs) were collected from the public database, and the datasets were merged into a combined dataset. PD-related differentially expressed genes (DEGs) were obtained and intersected with IMRGs to acquire iron metabolism-related DEGs (IMRDEGs). Subsequently, the IMRDEGs were subjected to functional enrichment and ROC analyses. Finally, key genes were identified, followed by the construction and evaluation of a risk score model, drug prediction, and Results: A total of 24 IMRDEGs were obtained. The AUC values of the 24 IMRDEGs ranged from 0.599 to 0.781. After logistic regression and the SVM analyses, a total of 10 key genes were identified, followed by the construction of the risk score model. The AUC value of the risk score model was 0.953, demonstrating good diagnostic value. The calibration curve and decision curve analysis showed that the risk score model has good predictive performance and clinical benefit for PD patients. Additionally, a total of 49 drugs were predicted. Conclusion: A total of 10 key genes were identified as potential biomarkers, and the risk score model was constructed for PD patients, exhibiting good diagnostic. This study may provide potential biomarkers for PD patients, promoting an understanding of the pathogenesis of PD.
引用
收藏
页码:437 / 449
页数:13
相关论文
共 68 条
[1]   Involvement of Endocytosis and Alternative Splicing in the Formation of the Pathological Process in the Early Stages of Parkinson's Disease [J].
Alieva, Anelya Kh. ;
Shadrina, Maria I. ;
Filatova, Elena V. ;
Karabanov, Aleksey V. ;
Illarioshkin, Sergey N. ;
Limborska, Svetlana A. ;
Slominsky, Petr A. .
BIOMED RESEARCH INTERNATIONAL, 2014, 2014
[2]   Parkin function in Parkinson's disease [J].
Arkinson, Connor ;
Walden, Helen .
SCIENCE, 2018, 360 (6386) :267-268
[3]  
Ben Salem Kamel, 2021, Tunis Med, V99, P383
[4]   Exploring bedside clinical features of parkinsonism: A focus on differential diagnosis [J].
Bhidayasiri, Roongroj ;
Rattanachaisit, Watchara ;
Phokaewvarangkul, Onanong ;
Lim, Thien Thien ;
Fernandez, Hubert H. .
PARKINSONISM & RELATED DISORDERS, 2019, 59 :74-81
[5]  
Bovenzi R, 2024, J Neural Transm
[6]   HNF4A and GATA6 Loss Reveals Therapeutically Actionable Subtypes in Pancreatic Cancer [J].
Brunton, Holly ;
Caligiuri, Giuseppina ;
Cunningham, Richard ;
Upstill-Goddard, Rosie ;
Bailey, Ulla-Maja ;
Garner, Ian M. ;
Nourse, Craig ;
Dreyer, Stephan ;
Jones, Marc ;
Moran-Jones, Kim ;
Wright, Derek W. ;
Paulus-Hock, Viola ;
Nixon, Colin ;
Thomson, Gemma ;
Jamieson, Nigel B. ;
McGregor, Grant A. ;
Evers, Lisa ;
McKay, Colin J. ;
Gulati, Aditi ;
Brough, Rachel ;
Bajrami, Ilirjana ;
Pettitt, Stephen J. ;
Dziubinski, Michele L. ;
Barry, Simon T. ;
Gruetzmann, Robert ;
Brown, Robert ;
Curry, Edward ;
Pajic, Marina ;
Musgrove, Elizabeth A. ;
Petersen, Gloria M. ;
Shanks, Emma ;
Ashworth, Alan ;
Crawford, Howard C. ;
Simeone, Diane M. ;
Froeling, Fieke E. M. ;
Lord, Christopher J. ;
Mukhopadhyay, Debabrata ;
Pilarsky, Christian ;
Grimmond, Sean E. ;
Morton, Jennifer P. ;
Sansom, Owen J. ;
Chang, David K. ;
Bailey, Peter J. ;
Biankin, Andrew, V .
CELL REPORTS, 2020, 31 (06)
[7]   Cysteine dioxygenase type 1 (CDO1): Its functional role in physiological and pathophysiological processes [J].
Chen, Min ;
Zhu, Jie-Ying ;
Mu, Wang-Jing ;
Guo, Liang .
GENES & DISEASES, 2023, 10 (03) :877-890
[8]   The pathogenesis and treatment mechanism of Parkinson's disease from the perspective of traditional Chinese medicine [J].
Chen, Peng ;
Zhang, Jie ;
Wang, Chen ;
Chai, Yi-hui ;
Wu, An-guo ;
Huang, Ning-yu ;
Wang, Long .
PHYTOMEDICINE, 2022, 100
[9]   Is cannabidiol the ideal drug to treat non-motor Parkinson's disease symptoms? [J].
Crippa, Jose Alexandre S. ;
Hallak, Jaime E. C. ;
Zuardi, Antonio W. ;
Guimaraes, Francisco S. ;
Tumas, Vitor ;
dos Santos, Rafael G. .
EUROPEAN ARCHIVES OF PSYCHIATRY AND CLINICAL NEUROSCIENCE, 2019, 269 (01) :121-133
[10]   Drosophila Skp1 Homologue SkpA Plays a Neuroprotective Role in Adult Brain [J].
Dabool, Lital ;
Hakim-Mishnaevski, Ketty ;
Juravlev, Liza ;
Flint-Brodsly, Naama ;
Mandel, Silvia ;
Kurant, Estee .
ISCIENCE, 2020, 23 (08)