Crystal structure determination and analyses of Hirshfeld surface, crystal voids, intermolecular interaction energies and energy frameworks of 1-benzyl-4-(methylsulfanyl)-3a,7a-dihydro-1H-pyrazolo[3,4-d]pyrimidine

被引:0
|
作者
Mustaphi, Nour El Hoda [1 ]
Chlouchi, Amina [1 ]
El Hafi, Mohamed [2 ,3 ]
Mague, Joel T. [4 ]
Hokelek, Tuncer [5 ]
El Monfalouti, Hanae [6 ]
Haoudi, Amal [7 ]
Mazzah, Ahmed [8 ]
机构
[1] Ibn Tofail Univ Kenitra, Higher Natl Sch Chem, Organ Chem Catalysis & Environm Lab, Kenitra, Morocco
[2] Mohammed First Univ, Fac Med & Pharm, Oujda, Morocco
[3] Mohammed V Univ Rabat, Lab Heterocycl Organ Chem URAC 21, Pharmacochem Competence Ctr, Fac Sci, Ave Ibn Battouta,BP 1014, Rabat, Morocco
[4] Tulane Univ, Dept Chem, New Orleans, LA 70118 USA
[5] Hacettepe Univ, Dept Phys, TR-06800 Ankara, Turkiye
[6] Mohammed V Univ Rabat, Lab Plant Chem Organ & Bioorgan Synth, Fac Sci, 4 Ave Ibn Battouta,BP 1014 RP, Rabat, Morocco
[7] Sidi Mohamed Ben Abdellah Univ, Fac Sci & Technol, Lab Appl Organ Chem, Rd Immouzer,BP 2202, Fes, Morocco
[8] Sci & Technol Lille USR 3290, Villeneuve Dascq, France
来源
ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS | 2024年 / 80卷
关键词
crystal structure; pyrazolopyrimidine; sulfide; hydrogen bond; C-H center dot center dot center dot pi(ring) interaction; QUANTITATIVE-ANALYSIS; MODEL ENERGIES; DERIVATIVES; CRYSTALEXPLORER; CONFORMATION; INHIBITORS; DESIGN; DFT;
D O I
10.1107/S2056989024005954
中图分类号
O7 [晶体学];
学科分类号
0702 ; 070205 ; 0703 ; 080501 ;
摘要
The pyrazolopyrimidine moiety in the title molecule, C13H12N4S, is planar with the methylsulfanyl substituent lying essentially in the same plane. The benzyl group is rotated well out of this plane by 73.64 (6)degrees, giving the molecule an approximate L shape. In the crystal, C-H center dot center dot center dot pi(ring) interactions and C-H center dot center dot center dot S hydrogen bonds form tubes extending along the a axis. Furthermore, there are pi-pi interactions between parallel phenyl rings with centroid-to-centroid distances of 3.8418 (12) angstrom. A Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H center dot center dot center dot H (47.0%), H center dot center dot center dot N/N center dot center dot center dot H (17.6%) and H center dot center dot center dot C/C center dot center dot center dot H (17.0%) interactions. The volume of the crystal voids and the percentage of free space were calculated to be 76.45 angstrom(3) and 6.39%, showing that there is no large cavity in the crystal packing. Evaluation of the electrostatic, dispersion and total energy frameworks indicate that the cohesion of the crystal structure is dominated by the dispersion energy contributions.
引用
收藏
页码:783 / +
页数:10
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