Crystal structure determination and analyses of Hirshfeld surface, crystal voids, intermolecular interaction energies and energy frameworks of 1-benzyl-4-(methylsulfanyl)-3a,7a-dihydro-1H-pyrazolo[3,4-d]pyrimidine

被引:0
|
作者
Mustaphi, Nour El Hoda [1 ]
Chlouchi, Amina [1 ]
El Hafi, Mohamed [2 ,3 ]
Mague, Joel T. [4 ]
Hokelek, Tuncer [5 ]
El Monfalouti, Hanae [6 ]
Haoudi, Amal [7 ]
Mazzah, Ahmed [8 ]
机构
[1] Ibn Tofail Univ Kenitra, Higher Natl Sch Chem, Organ Chem Catalysis & Environm Lab, Kenitra, Morocco
[2] Mohammed First Univ, Fac Med & Pharm, Oujda, Morocco
[3] Mohammed V Univ Rabat, Lab Heterocycl Organ Chem URAC 21, Pharmacochem Competence Ctr, Fac Sci, Ave Ibn Battouta,BP 1014, Rabat, Morocco
[4] Tulane Univ, Dept Chem, New Orleans, LA 70118 USA
[5] Hacettepe Univ, Dept Phys, TR-06800 Ankara, Turkiye
[6] Mohammed V Univ Rabat, Lab Plant Chem Organ & Bioorgan Synth, Fac Sci, 4 Ave Ibn Battouta,BP 1014 RP, Rabat, Morocco
[7] Sidi Mohamed Ben Abdellah Univ, Fac Sci & Technol, Lab Appl Organ Chem, Rd Immouzer,BP 2202, Fes, Morocco
[8] Sci & Technol Lille USR 3290, Villeneuve Dascq, France
来源
ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS | 2024年 / 80卷
关键词
crystal structure; pyrazolopyrimidine; sulfide; hydrogen bond; C-H center dot center dot center dot pi(ring) interaction; QUANTITATIVE-ANALYSIS; MODEL ENERGIES; DERIVATIVES; CRYSTALEXPLORER; CONFORMATION; INHIBITORS; DESIGN; DFT;
D O I
10.1107/S2056989024005954
中图分类号
O7 [晶体学];
学科分类号
0702 ; 070205 ; 0703 ; 080501 ;
摘要
The pyrazolopyrimidine moiety in the title molecule, C13H12N4S, is planar with the methylsulfanyl substituent lying essentially in the same plane. The benzyl group is rotated well out of this plane by 73.64 (6)degrees, giving the molecule an approximate L shape. In the crystal, C-H center dot center dot center dot pi(ring) interactions and C-H center dot center dot center dot S hydrogen bonds form tubes extending along the a axis. Furthermore, there are pi-pi interactions between parallel phenyl rings with centroid-to-centroid distances of 3.8418 (12) angstrom. A Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H center dot center dot center dot H (47.0%), H center dot center dot center dot N/N center dot center dot center dot H (17.6%) and H center dot center dot center dot C/C center dot center dot center dot H (17.0%) interactions. The volume of the crystal voids and the percentage of free space were calculated to be 76.45 angstrom(3) and 6.39%, showing that there is no large cavity in the crystal packing. Evaluation of the electrostatic, dispersion and total energy frameworks indicate that the cohesion of the crystal structure is dominated by the dispersion energy contributions.
引用
收藏
页码:783 / +
页数:10
相关论文
共 50 条
  • [1] Crystal structure determination, Hirshfeld surface, crystal void, intermolecular interaction energy analyses, as well as DFT and energy framework calculations of 2-(4-oxo-4,5-dihydro-1H-pyrazolo-[3,4-d]pyrimidin-1-yl)acetic acid
    Irrou, Ezaddine
    Elmachkouri, Younesse Ait
    Oubella, Ali
    Ouchtak, Hassan
    Dalbouha, Samira
    Mague, Joel T.
    Hokelek, Tuncer
    El Ghayati, Lhoussaine
    Sebbar, Nada Kheira
    Taha, Mohamed Labd
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2022, 78 : 953 - +
  • [2] Crystal structure and Hirshfeld surface analyses, crystal voids, intermolecular interaction energies and energy frameworks of 3-benzyl-1-(3-bromopropyl)-5,5-diphenylimidazolidine-2,4-dione
    Lamssane, Houda
    Haoudi, Amal
    Kartah, Badr Eddine
    Mazzah, Ahmed
    Mague, Joel T.
    Hokelek, Tuncer
    Rodi, Youssef Kandri
    Sebbar, Nada Kheira
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2024, 80 : 1118 - +
  • [3] Crystal structure and Hirshfeld surface analysis of 3-(4-methoxyphenyl)-1-methyl-4-phenyl-1H-pyrazolo[3,4-d]pyrimidine
    El Hafi, Mohamed
    Kansiz, Sevgi
    Lahmidi, Sanae
    Boulhaoua, Mohammed
    Ramli, Youssef
    Dege, Necmi
    Essassi, El Mokhtar
    Mague, Joel T.
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2019, 75 : 638 - +
  • [4] Crystal structure of 4-allylsulfanyl-1H-pyrazolo[3,4-d]pyrimidine
    El Fal, Mohammed
    Ramli, Youssef
    Essassi, El Mokhtar
    Saadi, Mohamed
    El Ammari, Lahcen
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2014, 70 : O1038 - +
  • [5] Crystal structure, Hirshfeld surface analysis and DFT calculations of ethyl 2-[4-(methylsulfanyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]acetate
    Elmachkouri, Younesse Ait
    Irrou, Ezaddine
    Dalbouha, Samira
    Ouachtak, Hassan
    Mague, Joel T.
    Hokelek, Tuncer
    El Ghayati, Lhoussaine
    Sebbar, Nada Kheira
    Taha, Mohamed Labd
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2022, 78 : 1265 - +
  • [6] Crystal structure of 1-methyl-4-methyl-sulfanyl-1H-pyrazolo[3,4-d]pyrimidine
    El Fal, Mohammed
    Ramli, Youssef
    Essassi, El Mokhtar
    Saadi, Mohamed
    El Ammari, Lahcen
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2014, 70 : O1281 - +
  • [7] Crystal structure, Hirshfeld surface and crystal void analysis, intermolecular interaction energies, DFT calculations and energy frameworks of 2H-benzo[b][1,4]thiazin-3(4H)-one 1,1-dioxide
    Irrou, Ezaddine
    Elmachkouri, Younesse Ait
    Mazzah, Ahmed
    Hokelek, Tuncer
    Haoudi, Amal
    Mague, Joel T.
    Taha, Mohamed Labd
    Sebbar, Nada Kheira
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2023, 79 : 1037 - +
  • [8] 4,5-Dihydro-1H-pyrazolo[3,4-d] pyrimidine containing phenothiazines as antitubercular agents
    Siddiqui, Arif B.
    Trivedi, Amit R.
    Kataria, Vipul B.
    Shah, Viresh H.
    BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2014, 24 (06) : 1493 - 1495
  • [9] The crystal structure of 1,5-dibenzyl-1H-pyrazolo[3,4-d]pyrimidine-4(5H)-thione
    El Fal, Mohammed
    Ramli, Youssef
    Essassi, El Mokhtar
    Saadi, Mohamed
    El Ammari, Lahcen
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2015, 71 : O95 - U406
  • [10] Crystal structure, Hirshfeld surface analysis, and calculations of intermolecular interaction energies and energy frameworks of 1-[(1-hexyl-1H-1,2,3-triazol-4-yl)methyl]-3-(1-methylethenyl)- benzimidazol-2-one
    El Atrassi, Zakaria
    Benzekri, Zakaria
    Blacque, Olivier
    Hokelek, Tuncer
    Mazzah, Ahmed
    Cherkaoui, Hassan
    Sebbar, Nada Kheira
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2024, 80 : 1075 - +