Draft genome sequences of multi-drug-resistant Escherichia coli strains isolated from ulcerative colitis patients

被引：0

作者：

Yadav, Asha ^{[1
]}

Shinde, Pratik Balwant ^{[1
]}

Dhar, Mahesh S. ^{[2
]}

Ponnusamy, Kalaiarasan ^{[3
]}

Marwal, Robin ^{[3
]}

Radhakrishnan, V. S. ^{[3
]}

Kedia, Saurabh ^{[4
]}

Ahuja, Vineet ^{[4
]}

Sharma, Krishna Kant ^{[1
]}

机构：

[1] Maharshi Dayanand Univ, Dept Microbiol, Lab Enzymol & Gut Microbiol, Rohtak, Haryana, India

[2] Sunny Corp Pvt Ltd, New Delhi, India

[3] Natl Ctr Dis Control, Dept Biotechnol, Delhi, India

[4] All India Inst Med Sci, Dept Gastroenterol & Human Nutr, New Delhi, India

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2024年

关键词：

Escherichia coli; whole-genome sequence; ulcerative colitis; antibiotic resistance;

D O I：

10.1128/mra.00719-24

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

The whole-genome sequences of four multi-drug-resistant Escherichia coli strains, namely, DAK02, DAK03, DAK05, and DAK10, are reported here. The E. coli strains were isolated from fecal samples of ulcerative colitis patients from Northern India. The size of the draft genome sequence ranged from 4,809 to 5,000 kb.

引用

页数：3

共 12 条

[1] CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database [J].

Alcock, Brian P. ;

Huynh, William ;

Chalil, Romeo ;

Smith, Keaton W. ;

Raphenya, Amogelang R. ;

Wlodarski, Mateusz A. ;

Edalatmand, Arman ;

Petkau, Aaron ;

Syed, Sohaib A. ;

Tsang, Kara K. ;

Baker, Sheridan J. C. ;

Dave, Mugdha ;

McCarthy, Madeline C. ;

Mukiri, Karyn M. ;

Nasir, Jalees A. ;

Golbon, Bahar ;

Imtiaz, Hamna ;

Jiang, Xingjian ;

Kaur, Komal ;

Kwong, Megan ;

Liang, Zi Cheng ;

Niu, Keyu C. ;

Shan, Prabakar ;

Yang, Jasmine Y. J. ;

Gray, Kristen L. ;

Hoad, Gemma R. ;

Jia, Baofeng ;

Bhando, Timsy ;

Carfrae, Lindsey A. ;

Farha, Maya A. ;

French, Shawn ;

Gordzevich, Rodion ;

Rachwalski, Kenneth ;

Tu, Megan M. ;

Bordeleau, Emily ;

Dooley, Damion ;

Griffiths, Emma ;

Zubyk, Haley L. ;

Brown, Eric D. ;

Maguire, Finlay ;

Beiko, Robert G. ;

Hsiao, William W. L. ;

Brinkman, Fiona S. L. ;

Van Domselaar, Gary ;

McArthur, Andrew G. .

NUCLEIC ACIDS RESEARCH, 2023, 51 (D1) :D690-D699

[2]

ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999

[3]

Andrews S., 2010, FASTQC QUALITY CONTR

[4] Trimmomatic: a flexible trimmer for Illumina sequence data [J].

Bolger, Anthony M. ;

Lohse, Marc ;

Usadel, Bjoern .

BIOINFORMATICS, 2014, 30 (15) :2114-2120

[5] High Prevalence of Antibiotic Resistance and Integrons in Escherichia coli Isolated from Urban River Water, India [J].

Kaushik, Megha ;

Khare, Neha ;

Kumar, Sanjay ;

Gulati, Pooja .

MICROBIAL DRUG RESISTANCE, 2019, 25 (03) :359-370

[6]

Lupindu AM., 2017, Escherichia coli-recent advances on physiology, pathogenesis and biotechnological applications, P187, DOI [10.5772/67390, DOI 10.5772/67390]

[7]

Martinson Jonathan N V, 2020, EcoSal Plus, V9, DOI 10.1128/ecosalplus.ESP-0003-2020

[8] Escherichia coli as an indicator of bacteriological quality of water: an overview [J].

Odonkor, Stephen T. ;

Ampofo, Joseph K. .

MICROBIOLOGY RESEARCH, 2013, 4 (01)

[9] CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes [J].

Parks, Donovan H. ;

Imelfort, Michael ;

Skennerton, Connor T. ;

Hugenholtz, Philip ;

Tyson, Gene W. .

GENOME RESEARCH, 2015, 25 (07) :1043-1055

[10]

Prjibelski Andrey, 2020, Curr Protoc Bioinformatics, V70, pe102, DOI 10.1002/cpbi.102

← 1 2 →