Complete genome sequences of three Pseudomonas aeruginosa jumbo bacteriophages discovered in Kenya

被引：0
作者：
Musila, Lillian [1 ]
Bird, Jordan T. [2 ]
Margulieux, Katie R. [3 ]
Kigen, Collins [1 ]
Mzhavia, Nino [3 ]
Filippov, Andrey A. [3 ]
Nikolich, Mikeljon P. [3 ]
机构：
[1] Walter Reed Army Inst Res Africa, Dept Emerging Infect Dis, Kericho, Kenya
[2] Univ Arkansas, Dept Biochem & Mol Biol, Little Rock, AR USA
[3] Walter Reed Army Inst Res, Wound Infect Dept, Bacterial Dis Branch, Silver Spring, MD 20910 USA
来源：
MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2024年 / 13卷 / 11期
关键词：
bacteriophage; genome; Pseudomonas aeruginosa; Phikzvirus; Kenya; bacteriophage therapy;
D O I：
10.1128/mra.00684-24
中图分类号：
Q93 [微生物学];
学科分类号：
071005 ; 100705 ;
摘要：
The genomes of three Pseudomonas aeruginosa Phikzvirus bacteriophages isolated in Kenya are described. The genomes of phages vB_PaePAO1-KEN19, vB_Pae3705-KEN49, and vB_Pae10145-KEN51, respectively, had lengths of 278,921, 280,231, and 280,173 bp, with 36.93%, 36.84%, and 36.86% GC content, containing 419, 417, and 417 coding sequences (including seven tRNAs in each genome).
引用
收藏
页数：4
相关论文
共 28 条
  • [1] How to Name and Classify Your Phage: An Informal Guide
    Adriaenssens, Evelien M.
    Brister, J. Rodney
    [J]. VIRUSES-BASEL, 2017, 9 (04):
  • [2] CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
    Alcock, Brian P.
    Raphenya, Amogelang R.
    Lau, Tammy T. Y.
    Tsang, Kara K.
    Bouchard, Megane
    Edalatmand, Arman
    Huynh, William
    Nguyen, Anna-Lisa, V
    Cheng, Annie A.
    Liu, Sihan
    Min, Sally Y.
    Miroshnichenko, Anatoly
    Tran, Hiu-Ki
    Werfalli, Rafik E.
    Nasir, Jalees A.
    Oloni, Martins
    Speicher, David J.
    Florescu, Alexandra
    Singh, Bhavya
    Faltyn, Mateusz
    Hernandez-Koutoucheva, Anastasia
    Sharma, Arjun N.
    Bordeleau, Emily
    Pawlowski, Andrew C.
    Zubyk, Haley L.
    Dooley, Damion
    Griffiths, Emma
    Maguire, Finlay
    Winsor, Geoff L.
    Beiko, Robert G.
    Brinkman, Fiona S. L.
    Hsiao, William W. L.
    Domselaar, Gary, V
    McArthur, Andrew G.
    [J]. NUCLEIC ACIDS RESEARCH, 2020, 48 (D1) : D517 - D525
  • [3] Andrews S., 2010, FASTQC QUALITY CONTR
  • [4] Causes for the intriguing presence of tRNAs in phages
    Bailly-Bechet, Marc
    Vergassola, Massimo
    Rocha, Eduardo
    [J]. GENOME RESEARCH, 2007, 17 (10) : 1486 - 1495
  • [5] CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats
    Bland, Charles
    Ramsey, Teresa L.
    Sabree, Fareedah
    Lowe, Micheal
    Brown, Kyndall
    Kyrpides, Nikos C.
    Hugenholtz, Philip
    [J]. BMC BIOINFORMATICS, 2007, 8 (1)
  • [6] Trimmomatic: a flexible trimmer for Illumina sequence data
    Bolger, Anthony M.
    Lohse, Marc
    Usadel, Bjoern
    [J]. BIOINFORMATICS, 2014, 30 (15) : 2114 - 2120
  • [7] Pharokka: a fast scalable bacteriophage annotation tool
    Bouras, George
    Nepal, Roshan
    Houtak, Ghais
    Psaltis, Alkis James
    Wormald, Peter-John
    Vreugde, Sarah
    [J]. BIOINFORMATICS, 2023, 39 (01)
  • [8] Sensitive protein alignments at tree-of-life scale using DIAMOND
    Buchfink, Benjamin
    Reuter, Klaus
    Drost, Hajk-Georg
    [J]. NATURE METHODS, 2021, 18 (04) : 366 - +
  • [9] Fast and sensitive protein alignment using DIAMOND
    Buchfink, Benjamin
    Xie, Chao
    Huson, Daniel H.
    [J]. NATURE METHODS, 2015, 12 (01) : 59 - 60
  • [10] Development of Giant Bacteriophage φKZ Is Independent of the Host Transcription Apparatus
    Ceyssens, Pieter-Jan
    Minakhin, Leonid
    Van den Bossche, An
    Yakunina, Maria
    Klimuk, Evgeny
    Blasdel, Bob
    De Smet, Jeroen
    Noben, Jean-Paul
    Blaesi, Udo
    Severinov, Konstantin
    Lavigne, Rob
    [J]. JOURNAL OF VIROLOGY, 2014, 88 (18) : 10501 - 10510
123