Selection of Sclerodermus pupariae Reference Genes for Quantitative Real-Time PCR

被引:0
|
作者
Zhou, Ting [1 ]
Feng, Huahua [1 ]
Zhang, Jie [2 ]
Tang, Yanlong [2 ]
Dong, Xiaoling [1 ]
Kang, Kui [2 ,3 ]
机构
[1] Yangtze Univ, Coll Agr, MARA Key Lab Sustainable Crop Prod Middle Reaches, Jingzhou 434025, Peoples R China
[2] Zunyi Normal Univ, Coll Biol & Agr, Zunyi 563006, Peoples R China
[3] Hubei Univ Med, Biomed Res Inst, Shiyan 442000, Peoples R China
基金
中国国家自然科学基金;
关键词
S; pupariae; reference gene screening; qRT-PCR; developmental stages; EXPRESSION; NORMALIZATION;
D O I
10.3390/insects16030268
中图分类号
Q96 [昆虫学];
学科分类号
摘要
S. pupariae is a newly discovered species of parasitoid wasps. Research into its development, behavioral genetics, and molecular mechanisms provides valuable insights for improving integrated pest management strategies. Quantitative real-time PCR (qRT-PCR) is the most commonly used method for analyzing gene expression. This method requires the identification of stable reference genes to accurately evaluate transcriptional level variations. In this study, eight candidate reference genes (TUB, TBP, RPS18, GAPDH, 18S rRNA, RPL32, Actin, and EF1-alpha) were identified and evaluated for their suitability as reference genes. Gene expression levels across different developmental stages were analyzed using three software tools, GeNorm, NormFinder, and BestKeeper, and the online tool RefFinder. The overall ranking of reference gene stability was as follows: RPS18 > 18S rRNA > RPL32 > GAPDH > Actin > TUB > TPB > EF1-alpha. Ultimately, RPS18 was determined to be the most stable reference gene.
引用
收藏
页数:12
相关论文
共 50 条
  • [41] Defining reference genes for quantitative real-time PCR analysis of anther development in rice
    Ji, Yanxiao
    Tu, Ping
    Wang, Kun
    Gao, Feng
    Yang, Weilong
    Zhu, Yingguo
    Li, Shaoqing
    ACTA BIOCHIMICA ET BIOPHYSICA SINICA, 2014, 46 (04) : 305 - 312
  • [42] Reference Gene Selection for Quantitative Real-Time PCR Analyses of Acer palmatum under Abiotic Stress
    Zhu, Lu
    Ma, Qiuyue
    Li, Shushun
    Wen, Jing
    Yan, Kunyuan
    Li, Qianzhong
    PHYTON-INTERNATIONAL JOURNAL OF EXPERIMENTAL BOTANY, 2020, 89 (02): : 385 - 403
  • [43] Screening for Suitable Reference Genes for Quantitative Real-Time PCR in Heterosigma akashiwo (Raphidophyceae)
    Ji, Nanjing
    Li, Ling
    Lin, Lingxiao
    Lin, Senjie
    PLOS ONE, 2015, 10 (07):
  • [44] Quantitative real-time PCR based evaluation and validation of reference genes in Gossypium arboreum
    Raghavendra, K. P.
    Kumar, Rakesh
    Das, Joy
    Santosh, H. B.
    More, Sachin A.
    Ramakrishna, N.
    Chawla, Shilpa G.
    Kranthi, Sandhya
    Kranthi, Keshav Raj
    INDIAN JOURNAL OF AGRICULTURAL SCIENCES, 2020, 90 (01): : 40 - 47
  • [45] Validation of Reference Genes for Real-Time Quantitative PCR (qPCR) Analysis of Avibacterium paragallinarum
    Wen, Shuxiang
    Chen, Xiaoling
    Xu, Fuzhou
    Sun, Huiling
    PLOS ONE, 2016, 11 (12):
  • [46] Selection and Validation of Reference Genes for Quantitative Real-Time PCR in Buckwheat (Fagopyrum esculentum) Based on Transcriptome Sequence Data
    Demidenko, Natalia V.
    Logacheva, Maria D.
    Penin, Aleksey A.
    PLOS ONE, 2011, 6 (05):
  • [47] Selection of suitable reference genes for quantitive real-time PCR normalization in Miscanthus lutarioriparia
    Cheng, Teng
    Zhu, Fenglin
    Sheng, Jiajing
    Zhao, Lingling
    Zhou, Fasong
    Hu, Zhongli
    Diao, Ying
    Jin, Surong
    MOLECULAR BIOLOGY REPORTS, 2019, 46 (04) : 4545 - 4553
  • [48] Selection and Verification of Standardized Reference Genes of Angelica dahurica under Various Abiotic Stresses by Real-Time Quantitative PCR
    Zhang, Jing
    He, Xinyi
    Zhou, Jun
    Dong, Zhuang
    Yu, Han
    Tang, Qi
    Yuan, Lei
    Peng, Siqing
    Zhong, Xiaohong
    He, Yuedong
    GENES, 2024, 15 (01)
  • [49] Gene expression studies of reference genes for quantitative real-time PCR: an overview in insects
    Shakeel, Muhammad
    Rodriguez, Alicia
    Bin Tahir, Urfa
    Jin, Fengliang
    BIOTECHNOLOGY LETTERS, 2018, 40 (02) : 227 - 236
  • [50] Selection and Validation of Reference Genes for mRNA Expression by Quantitative Real-Time PCR Analysis in Neolamarckia cadamba
    Huang, Tian
    Long, Jianmei
    Liu, Si-Wen
    Yang, Zi-Wei
    Zhu, Qi-Jin
    Zhao, Xiao-Lan
    Peng, Changcao
    SCIENTIFIC REPORTS, 2018, 8