Dummy Template Molecularly Imprinted Polymers for Electrochemical Detection of Cardiac Troponin I: A Combined Computational and Experimental Approach

被引:2
作者
Sadeghi Googheri, Mohammad Sadegh [1 ,2 ]
Campagnol, Davide [3 ]
Ugo, Paolo [3 ]
Hozhabr Araghi, Samira [4 ]
Karimian, Najmeh [3 ]
机构
[1] Univ Talca, Inst Invest Interdisciplinaria I3, Vicerrectoria Acad, 1 Poniente 1141, Talca 3460000, Chile
[2] Univ Talca, Fac Engn, Ctr Bioinformat Simulat & Modeling CBSM, 1 Poniente 1141, Talca 3460000, Chile
[3] Univ Ca Foscari Venice, Dept Mol Sci & Nanosyst, Via Torino 155, I-30172 Venice, Italy
[4] Univ Talca, Lab Mat Sci, Inst Quim Recursos Nat, Casilla 747, Talca 3460000, Chile
关键词
molecular dynamics simulations; molecularly imprinted polymer; dummy template; cardiac Troponin I; binding energy; electrochemical biosensor; CYTOCHROME-C; DENSITY; POLY(O-PHENYLENEDIAMINE); SURFACE; NANOPARTICLES; DIAGNOSIS; ARRAY; EWALD;
D O I
10.3390/chemosensors13010026
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
Cardiac troponin I (cTnI) is a crucial biomarker for the early detection of acute myocardial infarction (AMI), playing a significant role in cardiac health assessment. Molecularly imprinted polymers (MIPs) are valued for their stability, ease of fabrication, reusability, and selectivity. However, using the analyte as a template can be costly, especially if the analyte is expensive. In such cases, a dummy template (DT) with similar chemico-physical properties can be useful. This study aimed to design a DT-MIP for cTnI detection using cytochrome c (Cyt c) as the template, combining computational and experimental approaches. Molecular docking identified binding sites on Cyt c and cTnI for poly(o-phenylenediamine) (5PoPD) pentamers. Interactions and binding energies were examined using all-atom molecular dynamics (MDs) simulations and structural interaction fingerprint (SIFt) calculations. A DT-MIP-modified electrode for cTnI detection was prepared by electropolymerizing o-PD in the presence of Cyt c as a dummy template. Electrochemical techniques monitored the electropolymerization, template removal, and binding of the target analyte. The experimental results showed that the DT-MIPs exhibited a high binding affinity for cTnI, consistent with the binding energies observed in MD simulations. The satisfactory correlation between experimental and computational results validated our model-based approach for the rational design of dummy template molecularly imprinted polymers.
引用
收藏
页数:18
相关论文
共 89 条
[1]   Clinical impact of the troponin 99th percentile cut-off and clinical utility of myoglobin measurement in the early management of chest pain patients admitted to the Emergency Cardiology Department [J].
Amodio, Gianfranco ;
Antonelli, Gianfranco ;
Varraso, Lucia ;
Ruggieri, Vincenzo ;
Di Serio, Francesca .
CORONARY ARTERY DISEASE, 2007, 18 (03) :181-186
[2]  
[Anonymous], The PyMol Molecular Graphics System, Version #
[3]   Molecularly imprinted polymer-based electrochemical sensors for food contaminants determination [J].
Ayerdurai, Viknasvarri ;
Cieplak, Maciej ;
Kutner, Wlodzimierz .
TRAC-TRENDS IN ANALYTICAL CHEMISTRY, 2023, 158
[4]   Solution structure of oxidized horse heart cytochrome c [J].
Banci, L ;
Bertini, I ;
Gray, HB ;
Luchinat, C ;
Reddig, T ;
Rosato, A ;
Turano, P .
BIOCHEMISTRY, 1997, 36 (32) :9867-9877
[5]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[6]   Gold nanoparticles mediated label-free capacitance detection of cardiac troponin I [J].
Bhalla, Vijayender ;
Carrara, Sandro ;
Sharma, Priyanka ;
Nangia, Yogesh ;
Suri, C. Raman .
SENSORS AND ACTUATORS B-CHEMICAL, 2012, 161 (01) :761-768
[7]   INCORPORATION OF CYTOCHROME-C AND CYTOCHROME C(3) WITHIN POLY(ESTERSULFONIC ACID) FILMS CAST ON PYROLYTIC-GRAPHITE ELECTRODES [J].
BIANCO, P ;
TAYE, A ;
HALADJIAN, J .
JOURNAL OF ELECTROANALYTICAL CHEMISTRY, 1994, 377 (1-2) :299-303
[8]   DETERMINING ATOM-CENTERED MONOPOLES FROM MOLECULAR ELECTROSTATIC POTENTIALS - THE NEED FOR HIGH SAMPLING DENSITY IN FORMAMIDE CONFORMATIONAL-ANALYSIS [J].
BRENEMAN, CM ;
WIBERG, KB .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1990, 11 (03) :361-373
[9]   Canonical sampling through velocity rescaling [J].
Bussi, Giovanni ;
Donadio, Davide ;
Parrinello, Michele .
JOURNAL OF CHEMICAL PHYSICS, 2007, 126 (01)
[10]   Molecularly imprinted electrochemical sensor for the ultrasensitive detection of cytochrome c [J].
Campagnol, Davide ;
Karimian, Najmeh ;
Paladin, Dino ;
Rizzolio, Flavio ;
Ugo, Paolo .
BIOELECTROCHEMISTRY, 2022, 148