Chromosome-level Genome Assembly and Annotation of the Arctic Moss Ptychostomum knowltonii

被引:0
|
作者
Ma, Changling [1 ,2 ]
Zhou, Xuping [2 ]
Huang, Dan [1 ,2 ]
Zhang, Li [2 ]
Yao, Yifeng [3 ,4 ]
Liu, Yang [2 ]
Dong, Shanshan [2 ]
Peng, Tao [1 ]
机构
[1] Guizhou Normal Univ, Sch Life Sci, Guiyang 550025, Peoples R China
[2] Shenzhen & Chinese Acad Sci, Key Lab Southern Subtrop Plant Divers, Fairy Lake Bot Garden, Shenzhen 518004, Peoples R China
[3] Chinese Acad Sci, Inst Bot, State Key Lab Plant Divers & Specialty Crops, Beijing 100093, Peoples R China
[4] China Natl Bot Garden, Beijing 100093, Peoples R China
来源
GENOME BIOLOGY AND EVOLUTION | 2025年 / 17卷 / 01期
关键词
bryophyte; polar; adaptation; comparative genomic; RNA-SEQ; RECONSTRUCTION; ALIGNMENT; AUGUSTUS; PLANTS;
D O I
10.1093/gbe/evae268
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The polar regions host a diverse array of moss species that have evolved to thrive in extreme environments. These mosses exhibit remarkable adaptations, including tolerance to freezing temperatures, desiccation, and ultraviolet radiation. Despite their ecological significance, genomic data on these organisms are still limited, impeding our understanding of their evolutionary history and adaptive mechanisms in the context of climate change. In this study, we present the first chromosome-scale genome assembly and annotation of the Arctic moss Ptychostomum knowltonii. The assembled genome is 408.8 Mb in size, anchored to 12 pseudochromosomes, with a scaffold N50 of 32.61 Mb. Repetitive elements account for 56.24% of the genome. The genome contains 28,014 protein-coding genes, with a BUSCO completeness of 96.20%. This genomic resource will enable future comparative genomic studies, enhancing our understanding of how polar mosses may respond to a warming climate and shedding light on their evolutionary trajectories in persistently extreme environments.
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页数:6
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