Review of machine learning for lipid nanoparticle formulation and process development

被引:8
作者
Dorsey, Phillip J. [1 ,3 ]
Lau, Christina L. [2 ]
Chang, Ti-chiun [1 ]
Doerschuk, Peter C. [2 ]
D'Addio, Suzanne M. [1 ]
机构
[1] Merck & Co Inc, Pharmaceut Sci & Clin Supply, MRL, Rahway, NJ 07065 USA
[2] Cornell Univ, Sch Elect & Comp Engn, Ithaca, NY 14853 USA
[3] Univ Pittsburgh, Sch Med, Pittsburgh, PA 15213 USA
基金
美国国家科学基金会;
关键词
Lipid nanoparticle(s); LNP; Artificial intelligence; Machine learning; AI/ML; Optimization; Formulation and process development; CONVOLUTIONAL NEURAL-NETWORK; MESSENGER-RNA VACCINES; MICROMIXING MODELS; CATIONIC LIPIDS; U-NET; CELL DETECTION; PARTICLE-SIZE; PDF METHODS; DELIVERY; SIRNA;
D O I
10.1016/j.xphs.2024.09.015
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
Lipid nanoparticles (LNPs) are a subset of pharmaceutical nanoparticulate formulations designed to encapsulate, stabilize, and deliver nucleic acid cargoes in vivo. Applications for LNPs include new interventions for genetic disorders, novel classes of vaccines, and alternate modes of intracellular delivery for therapeutic proteins. In the pharmaceutical industry, establishing a robust formulation and process to achieve target product performance is a critical component of drug development. Fundamental understanding of the processes for making LNPs and their interactions with biological systems have advanced considerably in the wake of the COVID-19 pandemic. Nevertheless, LNP formulation research remains largely empirical and resource intensive due to the multitude of input parameters and the complex physical phenomena that govern the processes of nanoparticle precipitation, self-assembly, structure evolution, and stability. Increasingly, artificial intelligence and machine learning (AI/ML) are being applied to improve the efficiency of research activities through in silico models and predictions, and to drive deeper fundamental understanding of experimental inputs to functional outputs. This review will identify current challenges and opportunities in the development of robust LNP formulations of nucleic acids, review studies that apply machine learning methods to experimental datasets, and provide discussion on associated data science challenges to facilitate collaboration between formulation and data scientists, aiming to accelerate the advancement of AI/ML applied to LNP formulation and process optimization. (c) 2024 American Pharmacists Association. Published by Elsevier Inc. All rights are reserved, including those for text and data mining, AI training, and similar technologies.
引用
收藏
页码:3413 / 3433
页数:21
相关论文
共 261 条
[71]   Automatic Identification of the Stress Sources of Protein Aggregates Using Flow Imaging Microscopy Images [J].
Gambe-Gilbuena, Arni ;
Shibano, Yuriko ;
Krayukhina, Elena ;
Torisu, Tetsuo ;
Uchiyama, Susumu .
JOURNAL OF PHARMACEUTICAL SCIENCES, 2020, 109 (01) :614-623
[72]   Development of in silico methodology for siRNA lipid nanoparticle formulations [J].
Gao, Haoshi ;
Kan, Stanislav ;
Ye, Zhuyifan ;
Feng, Yuchen ;
Jin, Lei ;
Zhang, Xudong ;
Deng, Jiayin ;
Chan, Ging ;
Hu, Yuanjia ;
Wang, Yongjun ;
Cao, Dongsheng ;
Ji, Yuanhui ;
Liang, Mingtao ;
Li, Haifeng ;
Ouyang, Defang .
CHEMICAL ENGINEERING JOURNAL, 2022, 442
[73]   General Protocol for the Accurate Prediction of Molecular 13C/1H NMR Chemical Shifts via Machine Learning Augmented DFT [J].
Gao, Peng ;
Zhang, Jun ;
Peng, Qian ;
Zhang, Jie ;
Glezakou, Vassiliki-Alexandra .
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2020, 60 (08) :3746-3754
[74]   Loading hydrophilic drug in solid lipid media as nanoparticles: Statistical modeling of entrapment efficiency and particle size [J].
Ghadiri, Maryam ;
Fatemi, Shohreh ;
Vatanara, Alireza ;
Doroud, Delaram ;
Najafabadi, Abdolhossein Rouholamini ;
Darabi, Majid ;
Rahimi, Amir Abbas .
INTERNATIONAL JOURNAL OF PHARMACEUTICS, 2012, 424 (1-2) :128-137
[75]   Mechanism of Macromolecular Structure Evolution in Self-Assembled Lipid Nanoparticles for siRNA Delivery [J].
Gindy, Marian E. ;
DiFelice, Katherine ;
Kumar, Varun ;
Prud'homme, Robert K. ;
Celano, Robert ;
Haas, R. Matthew ;
Smith, Jeffrey S. ;
Boardman, David .
LANGMUIR, 2014, 30 (16) :4613-4622
[76]   Deep-Learning-Based Segmentation of Small Extracellular Vesicles in Transmission Electron Microscopy Images [J].
Gomez-de-Mariscal, Estibaliz ;
Maska, Martin ;
Kotrbova, Anna ;
Pospichalova, Vendula ;
Matula, Pavel ;
Munoz-Barrutia, Arrate .
SCIENTIFIC REPORTS, 2019, 9 (1)
[77]  
Goodfellow Ian J., 2014, P 3 INT C LEARN REPR
[78]   Bayesian Optimization for Adaptive Experimental Design: A Review [J].
Greenhill, Stewart ;
Rana, Santu ;
Gupta, Sunil ;
Vellanki, Pratibha ;
Venkatesh, Svetha .
IEEE ACCESS, 2020, 8 :13937-13948
[79]  
GRUNER SM, 1985, ANNU REV BIOPHYS BIO, V14, P211, DOI 10.1146/annurev.biophys.14.1.211
[80]   Effects of Formulation Variables on the Particle Size and Drug Encapsulation of Imatinib-Loaded Solid Lipid Nanoparticles [J].
Gupta, Biki ;
Poudel, Bijay Kumar ;
Pathak, Shiva ;
Tak, Jin Wook ;
Lee, Hee Hyun ;
Jeong, Jee-Heon ;
Choi, Han-Gon ;
Yong, Chul Soon ;
Kim, Jong Oh .
AAPS PHARMSCITECH, 2016, 17 (03) :652-662