Ghost species form an important component of the epiphytic lichens in temperate forests

被引:1
作者
Vondrak, Jan [1 ,2 ]
Kosnar, Jiri [2 ,4 ]
Svoboda, Stanislav [1 ,2 ]
Palice, Zdenek [1 ]
Soun, Jaroslav [3 ]
Kubasek, Jiri
Riha, Pavel [1 ]
Malicek, Jiri [1 ]
Rydlo, Jan [1 ]
Hofmeister, Jenyk [5 ,6 ]
机构
[1] Czech Acad Sci, Inst Bot, Zamek 1, CZ-25243 Pruhonice, Czech Republic
[2] Univ South Bohemia, Fac Sci, Dept Bot, Branisovska 1160, CZ-37005 Ceske Budejovice, Czech Republic
[3] Museum Dr Bohuslav Horak Rokycany, Branch Museum West Bohemia, Nam J Urbana 141, CZ-33701 Rokycany, Czech Republic
[4] Univ South Bohemia, Fac Sci, Dept Expt Plant Biol, Branisovska 31-1160, CZ-37005 Ceske Budejovice, Czech Republic
[5] Czch Univ Life Sci Prague, Fac Forestry & Wood Sci, Dept Forest Ecol, Kamycka 129, CZ-16500 Prague, Czech Republic
[6] Global Change Res Inst Czech Acad Sci, Global Change Res Inst, Belidla lidla 986-4a, CZ-60300 Brno, Czech Republic
来源
FOREST ECOSYSTEMS | 2025年 / 12卷
关键词
Biodiversity; DNA barcode; ITS; Environmental sampling; Global change; Lichen; Mitochondrial SSU; Taxonomic survey; DIVERSITY; BIODIVERSITY; OLD;
D O I
10.1016/j.fecs.2024.100254
中图分类号
S7 [林业];
学科分类号
0829 ; 0907 ;
摘要
Sequencing of environmental samples has great potential for biodiversity research, but its application is limited by the lack of reliable DNA barcode databases for species identifications. Such a database has been created for epiphytic lichens of Europe, allowing us to compare the results of environmental sequencing with standard taxonomic surveys. The species undetected by taxonomic surveys (what we term the ghost component) amount to about half of the species actually present in hectare plots of Central European forests. Some of these, which currently occur only as diaspores or weakly developed thalli, are likely to be favoured in the course of global change. The ghost component usually represents a larger fraction in managed forests than in old-growth unmanaged forests. The total species composition of different plots is much more similar than suggested by taxonomic surveys alone. On a regional scale, this supports the well-known statement that "everything is everywhere, but, the environment selects".
引用
收藏
页数:9
相关论文
共 37 条
[21]  
Orange A., 2010, MICROCHEMICAL METHOD
[22]  
Raats M. M., 1992, Food Quality and Preference, V3, P89, DOI 10.1016/0950-3293(91)90028-D
[23]   Influence of habitat fragmentation and habitat amount on soil fungi communities in ancient forests [J].
Raimbault, Alexandre ;
Brin, Antoine ;
Manzi, Sophie ;
Savoie, Jean Marie ;
Gandois, Laure ;
Oliva, Priscia ;
Fogliani, Oceane ;
Roy-Camille, Coralie ;
Gratacap, Leonie ;
Roy, Melanie .
LANDSCAPE ECOLOGY, 2024, 39 (02)
[24]  
Robison Abigail, 2023, Plant and Fungal Systematics, V68, P395, DOI 10.35535/pfsyst-2023-0007
[25]   VSEARCH: a versatile open source tool for metagenomics [J].
Rognes, Torbjorn ;
Flouri, Tomas ;
Nichols, Ben ;
Quince, Christopher ;
Mahe, Frederic .
PEERJ, 2016, 4
[26]   Aerial eDNA contributes vital information for fungal biodiversity assessment [J].
Runnel, Kadri ;
Lohmus, Piret ;
Kuengas, Kati ;
Marmor-Ohtla, Liis ;
Palo, Anneli ;
Putsepp, Geili ;
Tamm, Heidi ;
Tammekand, Indrek ;
Lohmus, Asko .
JOURNAL OF APPLIED ECOLOGY, 2024, 61 (10) :2418-2429
[27]   Natural deadwood hosts more diverse pioneering wood-inhabiting fungal communities than restored deadwood [J].
Saine, Sonja ;
Penttila, Reijo ;
Furneaux, Brendan ;
Monkhouse, Norman ;
Zakharov, Evgeny V. ;
Ovaskainen, Otso ;
Abrego, Nerea .
RESTORATION ECOLOGY, 2024, 32 (01)
[28]   Lecania falcata, a new species from Spain, the Canary Islands and the Azores, close to Lecania chlorotiza [J].
Serusiaux, Emmanuel ;
van den Boom, Pieter P. G. ;
Brand, Maarten A. ;
Coppins, Brian J. ;
Magain, Nicolas .
LICHENOLOGIST, 2012, 44 (05) :577-590
[29]   Introducing Intensively Managed Spruce Plantations in Swedish Forest Landscapes will Impair Biodiversity Decline [J].
Strengbom, Joachim ;
Dahlberg, Anders ;
Larsson, Artur ;
Lindelow, Ake ;
Sandstrom, Jonas ;
Widenfalk, Olof ;
Gustafsson, Lena .
FORESTS, 2011, 2 (03) :610-630
[30]   Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing [J].
Taylor, D. Lee ;
Walters, William A. ;
Lennon, Niall J. ;
Bochicchio, James ;
Krohn, Andrew ;
Caporaso, J. Gregory ;
Pennanen, Taina .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2016, 82 (24) :7217-7226