Aldo-keto reductase (AKR) superfamily website and database: An update

被引:3
|
作者
Huacachino, Andrea Andress [1 ,3 ]
Joo, Jaehyun [2 ]
Narayanan, Nisha [2 ]
Tehim, Anisha [2 ]
Himes, Blanca E. [2 ,3 ]
Penning, Trevor M. [3 ,4 ]
机构
[1] Univ Penn, Dept Biochem & Biophys, Philadelphia, PA 19104 USA
[2] Univ Penn, Dept Biostat Epidemiol & Informat, Philadelphia, PA 19104 USA
[3] Univ Penn, Ctr Excellence Environm Toxicol, Philadelphia, PA 19104 USA
[4] Univ Penn, Dept Syst Pharmacol & Translat Therapeut, Philadelphia, PA 19104 USA
基金
美国国家卫生研究院;
关键词
NAD(P) (H)-Dependent oxidoreductases; Cluster analysis; Family tree; Carbonyl reduction; Database; 1 MEMBER B10; 3-ALPHA-HYDROXYSTEROID DEHYDROGENASE REVEALS; SHORT-CHAIN DEHYDROGENASE/REDUCTASE; BIOSYNTHETIC GENE-CLUSTER; AMINO-ACID-SEQUENCES; DIHYDRODIOL DEHYDROGENASE; MOLECULAR-CLONING; CRYSTAL-STRUCTURE; DELTA(4)-3-OXOSTEROID 5-BETA-REDUCTASE; ANDROGEN METABOLISM;
D O I
10.1016/j.cbi.2024.111111
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The aldo-keto reductase (AKR) superfamily is a large family of proteins found across the kingdoms of life. Shared features of the family include 1) structural similarities such as an (alpha/beta)8-barrel beta ) 8-barrel structure, disordered loop structure, cofactor binding site, and a catalytic tetrad, and 2) the ability to catalyze the nicotinamide adenine dinucleotide (phosphate) reduced (NAD(P)H)-dependent reduction of a carbonyl group. A criteria of family membership is that the protein must have a measured function, and thus, genomic sequences suggesting the transcription of potential AKR proteins are considered pseudo-members until evidence of a functionally expressed protein is available. Currently, over 200 confirmed AKR superfamily members are reported to exist. A systematic nomenclature for the AKR superfamily exists to facilitate family and subfamily designations of the member to be communicated easily. Specifically, protein names include the root " AKR " , followed by the family represented by an Arabic number, the subfamily-if one exists-represented by a letter, and finally, the individual member represented by an Arabic number. The AKR superfamily database has been dedicated to tracking and reporting the current knowledge of the AKRs since 1997, and the website was last updated in 2003. Here, we present an updated version of the website and database that were released in 2023. The database contains genetic, functional, and structural data drawn from various sources, while the website provides alignment information and family tree structure derived from bioinformatics analyses.
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页数:12
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