Identification of novel transcription factors regulated by H3K27 acetylation in myogenic differentiation of porcine skeletal muscle satellite cells

被引:0
作者
Zhou, Peng [1 ,2 ]
Wang, Wenxuan [3 ]
Li, Jingjin [1 ,2 ,4 ]
Zheng, Zhuqing [5 ]
Du, Xiaoyong [3 ]
Fu, Liangliang [1 ,2 ]
Li, Xinyun [1 ,2 ]
机构
[1] Huazhong Agr Univ, Coll Anim Sci & Technol, Key Lab Agr Anim Genet Breeding & Reprod, Minist Educ, Wuhan, Peoples R China
[2] Huazhong Agr Univ, Coll Anim Sci & Technol, Key Lab Swine Genet & Breeding, Minist Agr, Wuhan, Peoples R China
[3] Huazhong Agr Univ, Coll informat, Wuhan, Peoples R China
[4] Chinese Acad Agr Sci, Agr Genom Inst Shenzhen, Shenzhen Branch, Guangdong Lab Lingnan Modern Agr,Key Lab Livestock, Shenzhen, Peoples R China
[5] Jingchu Univ Technol, Inst Agr Biotechnol, Jingmen, Hubei, Peoples R China
关键词
knockdown; myogenic differentiation; porcine skeletal muscle satellite cells; SGC-CBP30; ENHANCERS;
D O I
10.1096/fj.202401285RR
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
H3K27 acetylation (H3K27ac) is crucial in muscle development as it regulates gene expression. Dysregulation of H3K27ac level has been linked to muscle-related diseases such as Duchenne muscular dystrophy, yet the mechanisms through which H3K27ac influences myogenic differentiation are not fully understood. Here, we utilized the SGC-CBP30 drug, a CBP/p300 bromodomain inhibitor, to reduce H3K27ac level and investigated its effect on myogenic differentiation of porcine skeletal muscle satellite cells. The results demonstrated an increased H3K27ac level during normal muscle satellite cell differentiation. We found that the addition of SGC-CBP30 resulted in a reduced level of H3K27ac based on ATAC-seq and CUT&Tag data. Our analysis revealed that a cluster characterized by reduced levels of H3K27ac and increased levels of H3K27me3 was enriched with motifs corresponding to Bach2, MafK, and Fosl2 transcription factors. Furthermore, knockdown of Bach2, MafK, and Fosl2 produced a similar suppression effect on myogenic differentiation. Taken together, our study contributes to a better understanding of how H3K27ac influences myogenic differentiation.
引用
收藏
页数:12
相关论文
共 37 条
  • [1] Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project
    Andersson, Leif
    Archibald, Alan L.
    Bottema, Cynthia D.
    Brauning, Rudiger
    Burgess, Shane C.
    Burt, Dave W.
    Casas, Eduardo
    Cheng, Hans H.
    Clarke, Laura
    Couldrey, Christine
    Dalrymple, Brian P.
    Elsik, Christine G.
    Foissac, Sylvain
    Giuffra, Elisabetta
    Groenen, Martien A.
    Hayes, Ben J.
    Huang, LuSheng S.
    Khatib, Hassan
    Kijas, James W.
    Kim, Heebal
    Lunney, Joan K.
    McCarthy, Fiona M.
    McEwan, John C.
    Moore, Stephen
    Nanduri, Bindu
    Notredame, Cedric
    Palti, Yniv
    Plastow, Graham S.
    Reecy, James M.
    Rohrer, Gary A.
    Sarropoulou, Elena
    Schmidt, Carl J.
    Silverstein, Jeffrey
    Tellam, Ross L.
    Tixier-Boichard, Michele
    Tosser-Klopp, Gwenola
    Tuggle, Christopher K.
    Vilkki, Johanna
    White, Stephen N.
    Zhao, Shuhong
    Zhou, Huaijun
    [J]. GENOME BIOLOGY, 2015, 16
  • [2] Transcriptional and open chromatin analysis of bovine skeletal muscle development by single-cell sequencing
    Cai, Cuicui
    Wan, Peng
    Wang, Hui
    Cai, Xin
    Wang, Jiabo
    Chai, Zhixin
    Wang, Jikun
    Wang, Haibo
    Zhang, Ming
    Yang, Nan
    Wu, Zhijuan
    Zhu, Jiangjiang
    Yang, Xueyao
    Li, Yulian
    Yue, Binglin
    Dang, Ruihua
    Zhong, Jincheng
    [J]. CELL PROLIFERATION, 2023, 56 (09)
  • [3] Targeting p300/CBP Attenuates Hepatocellular Carcinoma Progression through Epigenetic Regulation of Metabolism
    Cai, Ling-Yan
    Chen, Shi-Jie
    Xiao, Sen-Hao
    Sun, Qin-Juan
    Ding, Chen-Hong
    Zheng, Bai-Nan
    Zhu, Xin-Yan
    Liu, Shu-Qing
    Yang, Feng
    Yang, Ya-Xi
    Zhou, Bing
    Luo, Cheng
    Zhang, Xin
    Xie, Wei-Fen
    [J]. CANCER RESEARCH, 2021, 81 (04) : 860 - 872
  • [4] Histone H3K27ac separates active from poised enhancers and predicts developmental state
    Creyghton, Menno P.
    Cheng, Albert W.
    Welstead, G. Grant
    Kooistra, Tristan
    Carey, Bryce W.
    Steine, Eveline J.
    Hanna, Jacob
    Lodato, Michael A.
    Frampton, Garrett M.
    Sharp, Phillip A.
    Boyer, Laurie A.
    Young, Richard A.
    Jaenisch, Rudolf
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (50) : 21931 - 21936
  • [5] Characterization and isolation of highly purified porcine satellite cells
    Ding, Shijie
    Wang, Fei
    Liu, Yan
    Liz, Sheng
    Zhou, Guanghong
    Hu, Ping
    [J]. CELL DEATH DISCOVERY, 2017, 3
  • [6] Bromodomain inhibition of the coactivators CBP/EP300 facilitate cellular reprogramming
    Ebrahimi, Ayyub
    Sevinc, Kenan
    Sevinc, Gulben Gurhan
    Cribbs, Adam P.
    Philpott, Martin
    Uyulur, Firat
    Morova, Tunc
    Dunford, James E.
    Goklemez, Sencer
    Ari, Sule
    Oppermann, Udo
    Onder, Tamer T.
    [J]. NATURE CHEMICAL BIOLOGY, 2019, 15 (05) : 519 - +
  • [7] Quantitative proteomic analysis of skeletal muscles from wild-type and transgenic mice carrying recessive Ryr1 mutations linked to congenital myopathies
    Eckhardt, Jan
    Ruiz, Alexis
    Koenig, Stephane
    Frieden, Maud
    Meier, Herve
    Schmidt, Alexander
    Treves, Susan
    Zorzato, Francesco
    [J]. ELIFE, 2023, 12
  • [8] Skeletal Muscle: A Brief Review of Structure and Function
    Frontera, Walter R.
    Ochala, Julien
    [J]. CALCIFIED TISSUE INTERNATIONAL, 2015, 96 (03) : 183 - 195
  • [9] Differential analysis of chromatin accessibility and histone modifications for predicting mouse developmental enhancers
    Fu, Shaliu
    Wang, Qin
    Moore, Jill E.
    Purcaro, Michael J.
    Pratt, Henry E.
    Fan, Kaili
    Gu, Cuihua
    Jiang, Cizhong
    Zhu, Ruixin
    Kundaje, Anshul
    Lu, Aiping
    Weng, Zhiping
    [J]. NUCLEIC ACIDS RESEARCH, 2018, 46 (21) : 11184 - 11201
  • [10] Chromatin accessibility profiling by ATAC-seq
    Grandi, Fiorella C.
    Modi, Hailey
    Kampman, Lucas
    Corces, M. Ryan
    [J]. NATURE PROTOCOLS, 2022, 17 (06) : 1518 - 1552