Unlocking Hope: Paving the Way for a Cutting-Edge Multi-Epitope Dengue Virus Vaccine

被引:0
作者
Wajeeha, Amtul Wadood [1 ]
Mukhtar, Mamuna [1 ]
Zaidi, Najam us Sahar Sadaf [1 ,2 ]
机构
[1] Natl Univ Sci & Technol, Atta Ur Rahman Sch Appl Biosci, Islamabad, Pakistan
[2] Pak Austria Fachhochschule Inst Appl Sci & Technol, Dept Biol & Hlth Sci, Khanpur Rd, Mang Haripur, Khyber Pakhtunk, Pakistan
关键词
Dengue; Multi-epitope vaccine; Homology modeling; Molecular docking; Vector design; Cloning; Immune simulations; MD simulation; STRUCTURE PREDICTION; CELL EPITOPES; PROTEIN; RESPONSES; LIVE; CANDIDATE; IMMUNITY; DISEASE; TARGET; TOOL;
D O I
10.1007/s12033-024-01294-4
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Dengue fever is a significant health issue in Pakistan, demanding a vaccine effective against all the viral strains. This study employs reverse vaccinology to develop potential dengue vaccine candidates (DVAX I-III). The study thoroughly examined conserved areas of dengue virus serotypes 1-4's structural and non-structural proteins. Key viral proteins were analyzed to find antigenic peptides, which were incorporated into vaccine candidates and potentiated with adjuvants. Computational methods predicted peptide structures and evaluated their binding to immune receptors TLR 2, TLR 4, HLA *A1101, and DRB*401. A molecular dynamics simulation lasting 100 ns of the DVAX II-TLR4 complex at different time intervals clearly indicated that the ligand is attached to the receptor. Normal mode analysis assessed the stability and flexibility of these interactions. Encouragingly, all three vaccine candidates demonstrated favorable interactions with these immune receptors and the potential to induce a robust immune response. These findings suggest their safety and warrant further in vivo studies to evaluate their efficacy for clinical development.
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页数:24
相关论文
共 91 条
[31]   JCat:: a novel tool to adapt codon usage of a target gene to its potential expression host [J].
Grote, A ;
Hiller, K ;
Scheer, M ;
Münch, R ;
Nörtemann, B ;
Hempel, DC ;
Jahn, D .
NUCLEIC ACIDS RESEARCH, 2005, 33 :W526-W531
[32]  
Guan Pingping, 2003, Appl Bioinformatics, V2, P63
[33]   In Silico Approach for Predicting Toxicity of Peptides and Proteins [J].
Gupta, Sudheer ;
Kapoor, Pallavi ;
Chaudhary, Kumardeep ;
Gautam, Ankur ;
Kumar, Rahul ;
Raghava, Gajendra P. S. .
PLOS ONE, 2013, 8 (09)
[34]  
Hebditch M, 2017, BIOINFORMATICS, V33, P3098, DOI [10.1093/BIOINFORMATICS/BTX345, 10.1093/bioinformatics/btx345]
[35]   Protein secondary structure prediction based on position-specific scoring matrices [J].
Jones, DT .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 292 (02) :195-202
[36]   Enhanced Efficacy of Therapeutic Cancer Vaccines Produced by Co-Treatment with Mycobacterium tuberculosis Heparin-Binding Hemagglutinin, a Novel TLR4 Agonist [J].
Jung, In Duk ;
Jeong, Soo Kyung ;
Lee, Chang-Min ;
Noh, Kyung Tae ;
Heo, Deok Rim ;
Shin, Yong Kyoo ;
Yun, Cheol-Heui ;
Koh, Won-Jung ;
Akira, Shizuo ;
Whang, Jake ;
Kim, Hwa-Jung ;
Park, Won Sun ;
Shin, Sung Jae ;
Park, Yeong-Min .
CANCER RESEARCH, 2011, 71 (08) :2858-2870
[37]   Multi-epitope vaccine against SARS-CoV-2 applying immunoinformatics and molecular dynamics simulation approaches [J].
Jyotisha ;
Singh, Samayaditya ;
Qureshi, Insaf Ahmed .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2022, 40 (07) :2917-2933
[38]   Immunoinformatics Aided Design and In-Vivo Validation of a Cross-Reactive Peptide Based Multi-Epitope Vaccine Targeting Multiple Serotypes of Dengue Virus [J].
Kaushik, Vikas ;
Krishnan, G. Sunil ;
Gupta, Lovi Raj ;
Kalra, Utkarsh ;
Shaikh, Abdul Rajjak ;
Cavallo, Luigi ;
Chawla, Mohit .
FRONTIERS IN IMMUNOLOGY, 2022, 13
[39]   IL-23 and IL-17 in the establishment of protective pulmonary CD4+ T cell responses after vaccination and during Mycobacterium tuberculosis challenge [J].
Khader, Shabaana A. ;
Bell, Guy K. ;
Pearl, John E. ;
Fountain, Jeffrey J. ;
Rangel-Moreno, Javier ;
Cilley, Garth E. ;
Shen, Fang ;
Eaton, Sheri M. ;
Gaffen, Sarah L. ;
Swain, Susan L. ;
Locksley, Richard M. ;
Haynes, Laura ;
Randall, Troy D. ;
Cooper, Andrea M. .
NATURE IMMUNOLOGY, 2007, 8 (04) :369-377
[40]  
Khan U., 2022, Annals of Medicine and Surgery, V76