Synthesis of Pd(II) and Ag(I) complexes with pyrazole thiosemicarbazone: Characterization of the molecular structure by DFT/X-ray diffraction, in vitro antibacterial activity and molecular docking study

被引:0
|
作者
Brinez-Ortega, Edwin [1 ,2 ]
Sanchez-Mora, Arturo
Macias, Mario A. [4 ]
Brandao, Pedro F. B. [5 ]
Chaparro, Diego [6 ]
Morales-Morales, David [3 ]
Burgos, A. E. [1 ]
机构
[1] Univ Nacl Colombia, Fac Ciencias, Dept Quim, Grp Invest Quim Coordinac & Bioinorgan, Ave carrera 30,N 45-03, Bogota 111321, DC, Colombia
[2] Univ ECCI Sede Bogota, Dept Ciencias Bas, Bogota, DC, Colombia
[3] Univ Nacl Autonoma Mexico, Inst Quim, Circuito Exterior S-N, Mexico City 04510, Mexico
[4] Univ los Andes, Dept Quim, Cristalog & Quim Mat, Bogota 111711, Colombia
[5] Univ Nacl Colombia Sede Bogota ?, Fac Ciencias, Dept Quim, Lab Microbiol Ambiental & Aplicada, Bogota, DC, Colombia
[6] Univ Melbourne, Dept Chem Engn, Parkville, Vic 3010, Australia
关键词
Antibacterial activity; DFT; Molecular docking; Pd(II) and Ag(I) complexes; Thiosemicarbazones; BASE LIGANDS SYNTHESIS; PALLADIUM(II) COMPLEXES; SPECTROSCOPIC CHARACTERIZATION; ANTIMICROBIAL ACTIVITY; BIOLOGICAL EVALUATION; SILVER(I) COMPLEXES; CRYSTAL-STRUCTURES; DNA; DERIVATIVES; BINDING;
D O I
10.1016/j.molstruc.2025.141557
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
New Pd(II) and Ag(I) complexes derived from (2E)-2-[(1,3-diphenyl-1H-pyrazol-4-yl)methylidene]-N-ethylhydrazine-1-carbothioamide (L) were synthesized. The compounds, with general formulas [PdL2]Cl2 and [AgL (phen)]NO3, 1,10-phenanthroline (phen), were characterized by physicochemical and theoretical techniques. Thus, the results obtained by IR, Raman, UV-Vis, NMR, and mass spectrometry data allowed the determination of the structures of complexes synthesized, indicating the chelation of ligand to the metals occurs through the sulfur atoms of thiol and the nitrogen of the azomethine group. Single-crystal X-ray diffraction (XRD) analysis revealed the formation of the E-isomer of the ligand. These results were confirmed with DFT calculations, in which atomic charge and molecular orbital analyses were conducted to predict the reactivity and stability of the compounds. The in vitro antibacterial assays were performed against Gram-positive (Staphylococcus aureus) and Gram-negative (Escherichia coli) bacteria. With the Ag(I) complex exhibiting the best activity (MIC = 35.74 mu M) against S. aureus, this being attributed to a synergistic effect between the Ag(I) ion, the pyrazole-derived thiosemicarbazone ligand and the 1,10-phenanthroline coligand. Finally, the in silico molecular docking studies showed that all the compounds have a potential antibacterial effect, especially the complex [PdL2]Cl2 with a more negative scoring energy value indicating a stronger interaction between the macromolecules and the ligand.
引用
收藏
页数:11
相关论文
共 50 条
  • [21] Synthesis of new Cu (II) and Zn (II) complexes derived from isatin-3-thiosemicarbazone: X-ray, anticancer activity, molecular docking, ADMET study, and quantum chemical calculations
    Rodzi, Ummi Liyana Mohamad
    Tajuddin, Amalina Mohd
    Sirat, Siti Syaida
    Kamaruzaman, Nur Azzalia
    Meroshine, Nageswara Rao
    Anouar, El Hassane
    Kassim, Karimah
    APPLIED ORGANOMETALLIC CHEMISTRY, 2024, 38 (01)
  • [22] Synthesis, X-Ray Diffraction, Spectroscopic Characterization, Hirshfeld Surface Analysis, Molecular Docking Studies, and DFT Calculation of New Pyrazolone Derivatives
    Elmachkouri, Younesse Ait
    Sert, Yusuf
    Irrou, Ezaddine
    Anouar, El Hassane
    Ouachtak, Hassan
    Mague, Joel T.
    Sebbar, Nada Kheira
    Essassi, El Mokhtar
    Taha, Mohamed Labd
    POLYCYCLIC AROMATIC COMPOUNDS, 2024, 44 (04) : 2598 - 2619
  • [23] X-ray crystallographic study, molecular docking, molecular dynamics and DFT/ADMET analyses of carboxylsulfamides
    Dekir, Ali
    Berredjem, Malika
    Rachedi, Khadidja Otmane
    Bahadi, Rania
    Djouad, Seif Eddine
    Bouacida, Sofiane
    Grib, Ismahene
    Iqbal, Nasir
    Redjemia, Rayenne
    Boussaker, Meriem
    JOURNAL OF MOLECULAR STRUCTURE, 2023, 1289
  • [24] Quinoline based Pd(II) complexes: Synthesis, characterization and evaluation of DNA/protein binding, molecular docking and in vitro anticancer activity
    Thirunavukkarasu, Thangavel
    Sparkes, Hazel A.
    Natarajan, Karuppannan
    INORGANICA CHIMICA ACTA, 2018, 482 : 229 - 239
  • [25] Synthesis, characterization and antibacterial activity of palladium(II) bromide complexes of thioamides; X-ray structure of [Pd(tetramethylthiourea)4]Br2
    Shafqat Nadeem
    Muhammad Khawar Rauf
    Michael Bolte
    Saeed Ahmad
    Syed Ahmed Tirmizi
    Maliha Asma
    Abdul Hameed
    Transition Metal Chemistry, 2010, 35 : 555 - 561
  • [26] Synthesis, characterization and antibacterial activity of palladium(II) bromide complexes of thioamides; X-ray structure of [Pd(tetramethylthiourea)4]Br2
    Nadeem, Shafqat
    Rauf, Muhammad Khawar
    Bolte, Michael
    Ahmad, Saeed
    Tirmizi, Syed Ahmed
    Asma, Maliha
    Hameed, Abdul
    TRANSITION METAL CHEMISTRY, 2010, 35 (05) : 555 - 561
  • [27] An insight into non-covalent interactions in binary, ternary and quaternary copper (II) complexes: Synthesis, X-ray structure, DFT calculations, antimicrobial activity and molecular docking studies
    Elhusseiny, Amel F.
    El-Dissouky, Ali
    Mautner, Franz
    Tawfik, Eman M.
    El-Sayed, Doaa S.
    INORGANICA CHIMICA ACTA, 2022, 532
  • [28] Synthesis, X-ray structure, DFT and antimicrobial studies of Ag(I) complexes with nicotinic acid derivatives
    Soliman, Saied M.
    Elsilk, Sobhy E.
    JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY, 2018, 187 : 48 - 53
  • [29] Synthesis, spectroscopic characterization, DFT, molecular docking and in vitro antibacterial potential of novel quinoline derivatives
    Bouzian, Younos
    Sert, Yusuf
    Khalid, Karrouchi
    Van Meervelt, Luc
    Chkirate, Karim
    Mahi, Lhassane
    Ahabchane, Noureddine Hamou
    Talbaoui, Ahmed
    Essassi, El Mokhtar
    JOURNAL OF MOLECULAR STRUCTURE, 2021, 1246
  • [30] Synthesis, X-ray crystal structure, DNA binding, antioxidant and cytotoxicity studies of Ni(II) and Pd(II) thiosemicarbazone complexes
    Ramachandran, Eswaran
    Kalaivani, Palaniappan
    Prabhakaran, Rathinasabapathi
    Rath, Nigam P.
    Brinda, Selvaraj
    Poornima, Paramasivan
    Padma, Viswanatha Vijaya
    Natarajan, Karuppannan
    METALLOMICS, 2012, 4 (02) : 218 - 227