Identification of Prognostic Genes Related to Cell Senescence and Lipid Metabolism in Glioblastoma Based on Transcriptome and Single-Cell RNA-Seq Data

被引:0
作者
Li, Qiong [1 ]
Liu, Hongde [1 ]
机构
[1] Southeast Univ, Sch Biol Sci & Med Engn, State Key Lab Digital Med Engn, Nanjing 211189, Peoples R China
关键词
glioblastoma; cell senescence; lipid metabolism; single-cell RNA sequencing; prognostic genes; BREAST-CANCER; R PACKAGE; SURVIVAL; INSIGHTS; OVEREXPRESSION; INHIBITION; EXPRESSION; MULTIFORME; PATTERNS; PATHWAY;
D O I
10.3390/ijms26051875
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Glioblastoma (GBM) is the most aggressive primary brain cancer, with poor prognosis due to its aggressive behavior and high heterogeneity. This study aimed to identify cellular senescence (CS) and lipid metabolism (LM)-related prognostic genes to improve GBM prognosis and treatment. Transcriptome and scRNA-seq data, CS-associated genes (CSAGs), and LM-related genes (LMRGs) were acquired from public databases. Prognostic genes were identified by intersecting CSAGs, LMRGs, and differentially expressed genes (DEGs), followed by WGCNA and univariate Cox regression. A risk model and nomogram were constructed. Analyses covered clinicopathological features, immune microenvironment, somatic mutations, and drug sensitivity. GBM scRNA-seq data identified key cells and prognostic gene expression. SOCS1 and PHB2 were identified as prognostic markers, contributing to the construction of a robust risk model with excellent predictive ability. High-risk group (HRG) patients had poorer survival, higher immune and stromal scores, and distinct somatic mutation profiles. Drug sensitivity analysis revealed significant differences in IC50 values. In microglia differentiation, SOCS1 and PHB2 showed dynamic expression patterns. These findings provide new strategies for GBM prognosis and treatment.
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页数:35
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共 99 条
[1]  
Arnoff TE, 2022, AM J CANCER RES, V12, P2102
[2]   Metabolic Reprogramming in Glioblastoma Multiforme: A Review of Pathways and Therapeutic Targets [J].
Ballen, Ashley Irin Cortes ;
Amosu, Maryam ;
Ravinder, Surya ;
Chan, Joey ;
Derin, Emre ;
Slika, Hasan ;
Tyler, Betty .
CELLS, 2024, 13 (18)
[3]   Construction and validation of a prognostic marker and risk model for HCC ultrasound therapy combined with WGCNA identification [J].
Bi, Yunlong ;
Jing, Yu ;
Guo, Lingling .
FRONTIERS IN GENETICS, 2022, 13
[4]   Gonadal sex patterns p21-induced cellular senescence in mouse and human glioblastoma [J].
Broestl, Lauren ;
Warrington, Nicole M. ;
Grandison, Lucia ;
Abou-Antoun, Tamara ;
Tung, Olivia ;
Shenoy, Saraswati ;
Tallman, Miranda M. ;
Rhee, Gina ;
Yang, Wei ;
Sponagel, Jasmin ;
Yang, Lihua ;
Kfoury-Beaumont, Najla ;
Hill, Cameron M. ;
Qanni, Sulaiman A. ;
Mao, Diane D. ;
Kim, Albert H. ;
Stewart, Sheila A. ;
Venere, Monica ;
Luo, Jingqin ;
Rubin, Joshua B. .
COMMUNICATIONS BIOLOGY, 2022, 5 (01)
[5]   Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade [J].
Charoentong, Pornpimol ;
Finotello, Francesca ;
Angelova, Mihaela ;
Mayer, Clemens ;
Efremova, Mirjana ;
Rieder, Dietmar ;
Hackl, Hubert ;
Trajanoski, Zlatko .
CELL REPORTS, 2017, 18 (01) :248-262
[6]  
Chen J, 2024, AGING-US, V16, P3989, DOI 10.18632/aging.205574
[7]   Aberrant ATM signaling and homology-directed DNA repair as a vulnerability of p53-mutant GBM to AZD1390-mediated radiosensitization [J].
Chen, Jiajia ;
Laverty, Daniel J. ;
Talele, Surabhi ;
Bale, Ashwin ;
Carlson, Brett L. ;
Porath, Kendra A. ;
Bakken, Katrina K. ;
Burgenske, Danielle M. ;
Decker, Paul A. ;
Vaubel, Rachael A. ;
Eckel-Passow, Jeanette E. ;
Bhargava, Rohit ;
Lou, Zhenkun ;
Hamerlik, Petra ;
Harley, Brendan ;
Elmquist, William F. ;
Nagel, Zachary D. ;
Gupta, Shiv K. ;
Sarkaria, Jann N. .
SCIENCE TRANSLATIONAL MEDICINE, 2024, 16 (734)
[8]   Three hematologic/immune system-specific expressed genes are considered as the potential biomarkers for the diagnosis of early rheumatoid arthritis through bioinformatics analysis [J].
Cheng, Qi ;
Chen, Xin ;
Wu, Huaxiang ;
Du, Yan .
JOURNAL OF TRANSLATIONAL MEDICINE, 2021, 19 (01)
[9]   Cellular senescence in glioma [J].
Chojak, Rafal ;
Fares, Jawad ;
Petrosyan, Edgar ;
Lesniak, Maciej S. .
JOURNAL OF NEURO-ONCOLOGY, 2023, 164 (1) :11-29
[10]   UpSetR: an R package for the visualization of intersecting sets and their properties [J].
Conway, Jake R. ;
Lex, Alexander ;
Gehlenborg, Nils .
BIOINFORMATICS, 2017, 33 (18) :2938-2940