Ultrasensitive and visual detection of pseudorabies virus based on CRISPR-Cas12b system

被引:0
作者
Kang, Haoran [1 ]
Yang, Xintan [1 ]
Jiang, Ruijiao [1 ]
Gao, Peng [1 ]
Zhang, Yongning [1 ]
Zhou, Lei [1 ]
Ge, Xinna [1 ]
Han, Jun [1 ]
Guo, Xin [1 ]
Yang, Hanchun [1 ]
机构
[1] China Agr Univ, Coll Vet Med, State Key Lab Vet Publ Hlth & Safety, Key Lab Anim Epidemiol,Minist Agr & Rural Affairs, Beijing, Peoples R China
关键词
CRISPR-Cas12b system; Pseudorabies virus; Recombinase aided amplification; Quantitative PCR; Rapid detection; Point-of-care testing; CRISPR; CHINA; VARIANT;
D O I
10.1016/j.micpath.2025.107447
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Aujeszky's disease (AD) is an acute infectious disease that infects pigs and other animals, resulting in significant economic losses and posing a threat to human health. Reliable and rapid detection methods are essential for the prevention of AD. In this study, a RAA-Cas12b assay based on recombinase-aided amplification (RAA) and CRISPR-Cas12b system was established, optimized and evaluated for the rapid detection of wild-type Pseudorabies Virus (PRV). The results can not only be detected by real-time fluorescence readout, but also can be visualized by a portable blue light instrument. There was no cross-reaction with PRV Bartha-K61 strain or other swine infectious viruses. The analytical sensitivities of the real-time PRV RAA-Cas12b assay and visual PRV RAACas12b assay were determined to be 15 copies/mu L with 95 % confidence interval and 140 copies/mu L with 95 % confidence interval, respectively. A total of 31 clinical samples were detected and compared with PRV qPCR assay to evaluate the diagnostic performance of the PRV RAA-Cas12b assay. The diagnostic coincidence rate of the two assays was 100 %. In summary, this convenient and reliable assay has great potential for rapid detection of wild type PRV in point-of-care testing (POCT).
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页数:8
相关论文
共 36 条
[1]   Human Endophthalmitis Caused By Pseudorabies Virus Infection, China, 2017 [J].
Ai, Jing-Wen ;
Weng, Shan-Shan ;
Cheng, Qi ;
Cui, Peng ;
Li, Yong-Jun ;
Wu, Hong-Long ;
Zhu, Yi-Min ;
Xu, Bin ;
Zhang, Wen-Hong .
EMERGING INFECTIOUS DISEASES, 2018, 24 (06) :1087-1090
[2]   iSCAN-V2: A One-Pot RT-RPA-CRISPR/Cas12b Assay for Point-of-Care SARS-CoV-2 Detection [J].
Aman, Rashid ;
Marsic, Tin ;
Sivakrishna Rao, Gundra ;
Mahas, Ahmed ;
Ali, Zahir ;
Alsanea, Madain ;
Al-Qahtani, Ahmed ;
Alhamlan, Fatimah ;
Mahfouz, Magdy .
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, 2022, 9
[3]   Pseudorabies Virus Variant in Bartha-K61-Vaccinated Pigs, China, 2012 [J].
An, Tong-Qing ;
Peng, Jin-Mei ;
Tian, Zhi-Jun ;
Zhao, Hong-Yuan ;
Li, Na ;
Liu, Yi-Min ;
Chen, Jia-Zeng ;
Leng, Chao-Liang ;
Sun, Yan ;
Chang, Dan ;
Tong, Guang-Zhi .
EMERGING INFECTIOUS DISEASES, 2013, 19 (11) :1749-1755
[4]   CRISPR provides acquired resistance against viruses in prokaryotes [J].
Barrangou, Rodolphe ;
Fremaux, Christophe ;
Deveau, Helene ;
Richards, Melissa ;
Boyaval, Patrick ;
Moineau, Sylvain ;
Romero, Dennis A. ;
Horvath, Philippe .
SCIENCE, 2007, 315 (5819) :1709-1712
[5]   Real-Time Reverse Transcription Recombinase-Aided Amplification Assay for Rapid Amplification of the N Gene of SARS-CoV-2 [J].
Cui, Huan ;
Tu, Fei ;
Zhang, Cheng ;
Zhang, Chunmao ;
Zhao, Kui ;
Liu, Juxiang ;
Dong, Shishan ;
Chen, Ligong ;
Liu, Jun ;
Guo, Zhendong .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (23)
[6]   CRISPRrepeat sequences and relative spacing specify DNA integration by Pyrococcus furiosus Cas1 and Cas2 [J].
Grainy, Julie ;
Garrett, Sandra ;
Graveley, Brenton R. ;
Terns, Michael P. .
NUCLEIC ACIDS RESEARCH, 2019, 47 (14) :7518-7531
[7]   CRISPR/Cas12a-Derived electrochemical aptasensor for ultrasensitive detection of COVID-19 nucleocapsid protein [J].
Han, Cong ;
Li, Wenjin ;
Li, Qian ;
Xing, Wenping ;
Luo, Hang ;
Ji, Haishuo ;
Fang, Xiaona ;
Luo, Zhaofeng ;
Zhang, Liyun .
BIOSENSORS & BIOELECTRONICS, 2022, 200
[8]   Interspecies Transmission, Genetic Diversity, and Evolutionary Dynamics of Pseudorabies Virus [J].
He, Wanting ;
Auclert, Lisa Zoe ;
Zhai, Xiaofeng ;
Wong, Gary ;
Zhang, Cheng ;
Zhu, Henan ;
Xing, Gang ;
Wang, Shilei ;
He, Wei ;
Li, Kemang ;
Wang, Liang ;
Han, Guan-Zhu ;
Veit, Michael ;
Zhou, Jiyong ;
Su, Shuo .
JOURNAL OF INFECTIOUS DISEASES, 2019, 219 (11) :1705-1715
[9]   Detection of SARS-CoV-2 with SHERLOCK One-Pot Testing [J].
Joung, Julia ;
Ladha, Alim ;
Saito, Makoto ;
Kim, Nam-Gyun ;
Woolley, Ann E. ;
Segel, Michael ;
Barretto, Robert P. J. ;
Ranu, Amardeep ;
Macrae, Rhiannon K. ;
Faure, Guilhem ;
Ioannidi, Eleonora I. ;
Krajeski, Rohan N. ;
Bruneau, Robert ;
Huang, Meei-Li W. ;
Yu, Xu G. ;
Li, Jonathan Z. ;
Walker, Bruce D. ;
Hung, Deborah T. ;
Greninger, Alexander L. ;
Jerome, Keith R. ;
Gootenberg, Jonathan S. ;
Abudayyeh, Omar O. ;
Zhang, Feng .
NEW ENGLAND JOURNAL OF MEDICINE, 2020, 383 (15) :1492-+
[10]   Rapid Visual Detection of Glaesserella parasuis with a Real-Time Recombinase-Aided Amplification Assay [J].
Kang, Haoran ;
Chen, Dengjin ;
Yang, Xintan ;
Jiang, Ruijiao ;
Song, Cheng ;
Zhang, Yongning ;
Zhou, Lei ;
Ge, Xinna ;
Han, Jun ;
Guo, Xin ;
Yang, Hanchun .
TRANSBOUNDARY AND EMERGING DISEASES, 2023, 2023