Diploid chromosome-level genome assembly and annotation for Lycorma delicatula

被引:0
作者
Snead, Anthony A. [1 ,2 ]
Meng, Fang [1 ,2 ]
Largotta, Nicolas [3 ]
Winchell, Kristin M. [1 ,2 ]
Levine, Brenna A. [3 ,4 ]
机构
[1] NYU, Dept Biol, New York, NY USA
[2] NYU, Ctr Genom & Syst Biol, New York, NY USA
[3] Kean Univ, Dept Biol, Union, NJ 07083 USA
[4] Chiricahua Desert Museum, Rodeo, NM 88056 USA
基金
美国国家科学基金会;
关键词
HEMIPTERA FULGORIDAE; RNA-SEQ; EVOLUTIONARY; PHEROMONES; PREDICTION; ALIGNMENT; AUGUSTUS; PARADOX; PEST;
D O I
10.1038/s41597-025-04854-8
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The spotted lanternfly (Lycorma delicatula) is a planthopper species (Hemiptera: Fulgoridae) native to China but invasive in South Korea, Japan, and the United States where it is a significant threat to agriculture. Genomic resources are critical to both management of this species and understanding the genomic characteristics of successful invaders. We report an annotated, haplotype-phased, chromosome-level genome assembly for the spotted lanternfly using PacBio long-read sequencing, Hi-C technology, and RNA-seq. The 2.2 Gbp genome comprises 13 chromosomes, and whole genome resequencing of eighty-two adults indicated chromosome four as the sex chromosome and a corresponding XO sex-determination system. We identified over 12,000 protein-coding genes and performed functional annotation, facilitating the identification of candidate genes that may hold importance for spotted lanternfly control. The assemblies and annotations were highly complete with over 96% of BUSCO genes complete regardless of the database (i.e., Eukaryota, Arthropoda, Insecta). This reference-quality genome will serve as an important resource for development and optimization of management practices for the spotted lanternfly and invasive species genomics as a whole.
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页数:11
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