Drugs Discovery by Shape Similarity Using Deep Learning

被引:0
|
作者
Romero, Felipe [1 ]
Romero, Luis F. [1 ]
Redondo, Juana L. [2 ]
Ortigosa, Pilar M. [2 ]
机构
[1] Univ Malaga, Comp Architecture, Blvd Louis Pasteur, Malaga 29071, Spain
[2] Univ Almeria, Informat, Almeria, Spain
关键词
Deep Learning; Drugs discovery; Hybrid Computing; 3D Object Recognition; Embarrassingly Parallel; POINTS; SPHERE;
D O I
10.1007/s10957-024-02589-x
中图分类号
C93 [管理学]; O22 [运筹学];
学科分类号
070105 ; 12 ; 1201 ; 1202 ; 120202 ;
摘要
Searching for one or several molecules in a database using their shapes has great interest from a biochemical point of view, but requires a huge computational effort due to the complexity of the algorithms and the sizes of the databases in the pharmaceutical industry. This work uses Deep Learning by training neural networks with hundreds of images of each molecule, rendered by projections (using GPUs) on planes whose normal vectors are equally distributed in the 3D space (using Fibonacci spirals). The results obtained, both in accuracy and time, exceeded expectations, opening a hopeful path of research.
引用
收藏
页数:23
相关论文
共 50 条
  • [1] Image Cosegmentation Using Shape Similarity and Object Discovery Scheme
    Xu, Haiping
    Wang, Meiqing
    Chen, Fei
    Lai, Choi-Hong
    INTERNATIONAL JOURNAL OF PATTERN RECOGNITION AND ARTIFICIAL INTELLIGENCE, 2018, 32 (10)
  • [2] Accelerating Drugs Discovery with Deep Reinforcement Learning: An Early Approach
    Serrano, Antonio
    Imbernon, Baldomero
    Perez-Sanchez, Horacio
    Cecilia, Jose M.
    Bueno-Crespo, Andres
    Abellan, Jose L.
    47TH INTERNATIONAL CONFERENCE ON PARALLEL PROCESSING (ICPP '18), 2018,
  • [3] SURVEY ON SENTENCE SIMILARITY EVALUATION USING DEEP LEARNING
    Ramaprabha, J.
    Das, Sayan
    Mukerjee, Pronoy
    PROCEEDINGS OF THE 10TH NATIONAL CONFERENCE ON MATHEMATICAL TECHNIQUES AND ITS APPLICATIONS (NCMTA 18), 2018, 1000
  • [4] Unaligned Sequence Similarity Search Using Deep Learning
    Senter, James K.
    Royalty, Taylor M.
    Steen, Andrew D.
    Sadovnik, Amir
    2019 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), 2019, : 1892 - 1899
  • [5] Using Deep Learning for Image Similarity in Product Matching
    Rivas-Sanchez, Mario
    De La Paz Guerrero-Lebrero, Maria
    Guerrero, Elisa
    Barcena-Gonzalez, Guillermo
    Martel, Jaime
    Galindo, Pedro L.
    ADVANCES IN COMPUTATIONAL INTELLIGENCE, IWANN 2017, PT I, 2017, 10305 : 281 - 290
  • [6] Motif Discovery Using Similarity-Constraints Deep Neural Networks
    Rong, Chuitian
    Chen, Ziliang
    Lin, Chunbin
    Wang, Jianming
    DATABASE SYSTEMS FOR ADVANCED APPLICATIONS (DASFAA 2020), PT I, 2020, 12112 : 587 - 603
  • [7] Using Deep Learning for Community Discovery in Social Networks
    Jin, Di
    Ge, Meng
    Li, Zhixuan
    Lu, Wenhuan
    He, Dongxiao
    Fogelman-Soulie, Francoise
    2017 IEEE 29TH INTERNATIONAL CONFERENCE ON TOOLS WITH ARTIFICIAL INTELLIGENCE (ICTAI 2017), 2017, : 160 - 167
  • [8] Computational drug discovery using deep learning approaches
    Isayev, Olexandr
    Politi, Regina
    Tropsha, Alexander
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2016, 251
  • [9] Discovery of potential antidiabetic peptides using deep learning
    Yue, Jianda
    Xu, Jiawei
    Li, Tingting
    Li, Yaqi
    Chen, Zihui
    Liang, Songping
    Liu, Zhonghua
    Wang, Ying
    Computers in Biology and Medicine, 2024, 180
  • [10] Knowledge Discovery in Nanophotonics Using Geometric Deep Learning
    Kiarashinejad, Yashar
    Zandehshahvar, Mohammadreza
    Abdollahramezani, Sajjad
    Hemmatyar, Omid
    Pourabolghasem, Reza
    Adibi, Ali
    ADVANCED INTELLIGENT SYSTEMS, 2020, 2 (02)