Chromosome-level genome assembly of the traditional medicinal plant Lindera aggregata

被引:0
作者
Shi, Yujie [1 ]
Chen, Zhen [1 ]
Ge, Junxia [2 ]
Jiang, Jingyong [3 ]
Li, Qianfan [4 ]
Lin, Yiluo [2 ]
Yu, Weifu [2 ]
Zeng, Wei [1 ]
机构
[1] Taizhou Univ, Coll Life Sci, Zhejiang Prov Key Lab Plant Evolutionary Ecol & Co, Taizhou 318000, Peoples R China
[2] Zhejiang Hongshiliang Grp Tiantai Mt Wu Yao Co Ltd, Taizhou 318000, Peoples R China
[3] Taizhou Acad Agr Sci, Inst Hort, Linhai 317000, Peoples R China
[4] Zhejiang A&F Univ, Coll Forestry & Biotechnol, State Key Lab Subtrop Silviculture, Hangzhou 311300, Peoples R China
关键词
ALIGNMENT; TRANSCRIPTOME; COVERAGE; UPDATE;
D O I
10.1038/s41597-025-04891-3
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Lindera aggregata is a renowned medicinal plant in China, particularly the variety from Tiantai, Zhejiang Province, which is esteemed for its superior medicinal properties. Beyond its medicinal value, it holds significant economic potential and phylogenetic significance. Utilizing a range of sequencing techniques, we have successfully assembled and annotated a high-quality chromosome-level genome of L. aggregata. The assembled genome spans approximately 1.59 Gb, with a scaffold N50 length of 132.62 Mb. Approximately 93.07% of the assembled sequences have been anchored to 12 pseudo-chromosomes, and 70.02% of the genome consists of repetitive sequences. According to the annotations, a total of 33,283 genes are identified, of which 96.95% can predict function. This high-quality chromosome-level assembly and annotation will greatly assist in the development and utilization of L. aggregata's valuable resources, and also provide a crucial molecular foundation for investigating the evolutionary relationships within the Lauraceae family and the mechanisms behind the synthesis of active ingredients in L. aggregata.
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页数:9
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