Functional tissue units in the Human Reference Atlas

被引:1
|
作者
Bidanta, Supriya [1 ]
Borner, Katy [1 ]
Herr Ii, Bruce W. [1 ]
Quardokus, Ellen M. [1 ]
Nagy, Marcell [2 ,3 ]
Gustilo, Katherine S. [1 ]
Bajema, Rachel [1 ]
Maier, Elizabeth [1 ]
Molontay, Roland [2 ,3 ]
Weber, Griffin M. [4 ]
机构
[1] Indiana Univ, Luddy Sch Informat Comp & Engn, Dept Intelligent Syst Engn, Bloomington, IN 47408 USA
[2] Budapest Univ Technol & Econ, Inst Math, Dept Stochast, H-1111 Budapest, Hungary
[3] Semmelweis Univ, Inst Biostat & Network Sci, H-1085 Budapest, Hungary
[4] Harvard Med Sch, Dept Biomed Informat, Boston, MA 02115 USA
关键词
D O I
10.1038/s41467-024-54591-6
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Functional tissue units form the basic building blocks of organs and are important for understanding and modeling the healthy physiological function of the organ and changes that occur during disease states. In this comprehensive catalog of 22 anatomically based, nested functional tissue units from 10 healthy human organs, we document the definition, physical dimensions, blood vasculature connections, and cellular composition. All anatomy terms are mapped to the multi-species Uber-anatomy Ontology (Uberon) and cells are mapped to Cell Ontology to support computational access via standardized metadata. The catalog includes datasets, illustrations, and a large printable poster illustrating how the blood vasculature connects the 22 functional tissue units in 10 organs. All data and code are freely available. The work is part of an ongoing international effort to construct a Human Reference Atlas of the 37 trillion cells that make up the healthy human body.
引用
收藏
页数:7
相关论文
共 50 条
  • [31] Functional tissue units and their primary tissue motifs in multi-scale physiology
    Bernard de Bono
    Pierre Grenon
    Richard Baldock
    Peter Hunter
    Journal of Biomedical Semantics, 4
  • [32] Functional tissue units and their primary tissue motifs in multi-scale physiology
    de Bono, Bernard
    Grenon, Pierre
    Baldock, Richard
    Hunter, Peter
    JOURNAL OF BIOMEDICAL SEMANTICS, 2013, 4
  • [33] Spleen Organoid Units Generate Functional Human and Mouse Tissue-Engineered Spleen in a Murine Model
    Gee, Kristin
    Isani, Mubina A.
    Fode, Alexa
    Maselli, Kathryn M.
    Zuber, Samuel M.
    Fowler, Kathryn L.
    Squillaro, Anthony, I
    Nucho, Laura-Marie A.
    Grikscheit, Tracy C.
    TISSUE ENGINEERING PART A, 2020, 26 (7-8) : 411 - 418
  • [34] A hierarchical atlas of the human cerebellum for functional precision mapping
    Nettekoven, Caroline
    Zhi, Da
    Shahshahani, Ladan
    Pinho, Ana Luisa
    Saadon-Grosman, Noam
    Buckner, Randy Lee
    Diedrichsen, Jorn
    NATURE COMMUNICATIONS, 2024, 15 (01)
  • [35] Quick Reference Atlas
    Mandel, R
    SOCIAL SCIENCE COMPUTER REVIEW, 1996, 14 (02) : 228 - 230
  • [36] An endoderm reference atlas
    Christine Weber
    Nature Cell Biology, 2021, 23 : 1108 - 1108
  • [37] Functional human tissue assays
    Hillier, Chris
    Bunton, David
    DRUG DISCOVERY TODAY, 2007, 12 (9-10) : 382 - 388
  • [38] An endoderm reference atlas
    Weber, Christine
    NATURE CELL BIOLOGY, 2021, 23 (11) : 1108 - 1108
  • [39] A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated muscle stem cell populations
    Andrea J. De Micheli
    Jason A. Spector
    Olivier Elemento
    Benjamin D. Cosgrove
    Skeletal Muscle, 10
  • [40] A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated muscle stem cell populations
    De Micheli, Andrea J.
    Spector, Jason A.
    Elemento, Olivier
    Cosgrove, Benjamin D.
    SKELETAL MUSCLE, 2020, 10 (01)