Chromosome-level genome assembly of soybean aphid

被引：0

作者：

Qiu, Shaolong ^{[1
]}

Wu, Ningning ^{[1
]}

Sun, Xiaodong ^{[2
]}

Xue, Yongguo ^{[3
]}

Xia, Jixing ^{[1
]}

机构：

[1] China Agr Univ, Coll Plant Protect, State Key Lab Agr & Forestry Biosecur, MOA Key Lab Pest Monitoring & Green Management, Beijing 100193, Peoples R China

[2] Heilongjiang Prov Agrotech Extens Stn, Harbin 150090, Peoples R China

[3] Heilongjiang Prov Acad Agr Sci, Inst Soybean Res, Harbin 150086, Peoples R China

来源：

SCIENTIFIC DATA | 2025年 / 12卷 / 01期

基金：

中国国家自然科学基金;

关键词：

RNA-SEQ; ANNOTATION; GLYCINES; AUGUSTUS; PROVIDES; SYSTEM;

D O I：

10.1038/s41597-025-04711-8

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Soybean aphid (Aphis glycines) is one of the main pests on soybeans, which causes serious damage to the soybean worldwide. The current genome of the soybean aphid is quite fragmented, which has impeded scientific research to some extent. In this study, we assembled a chromosome-level genome of the soybean aphid using MGI short reads, PacBio HiFi long reads and Hi-C reads. The genome sequence was anchored to four pseudo-chromosomes, with a total genome length of 324 Mb and a scaffold N50 length of 88.85 Mb. We evaluated the genome based on insecta_odb10 and the results show it has a completeness of 97.2%. A total of 20,781 protein-coding genes were predicted in the genome, of which 17,183 genes were annotated in at least one protein database. Our work provides a new genomic resource for the soybean aphid study.

引用

页数：7