Isolation, structure analysis and expression characterization of the Hexokinase gene family in Sorghum bicolor

被引:3
作者
Li, Sen [1 ]
Liu, Yansheng [1 ]
Qin, Xin'er [1 ]
He, Xiaofei [1 ]
Han, Shaopeng [1 ]
Lv, Yang [1 ]
Deng, Zhuying [1 ]
Zeng, Gongjian [1 ]
Gao, Xinqiang [2 ]
Hu, Yongfeng [1 ]
Shen, Xiangling [1 ]
机构
[1] Three Gorges Univ, Biotechnol Res Ctr, Key Lab Three Gorges Reg Plant Genet & Germplasm E, Yichang 443000, Hubei, Peoples R China
[2] Anyang Inst Technol, Anyang 455000, Henan, Peoples R China
关键词
Hexokinases; Sorghum bicolor (L.) Moench; Gene family; Abiotic stress; Expression analysis; PLANT; ACCUMULATION; FEATURES;
D O I
10.1007/s13205-024-04190-5
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Hexokinases (HXK) not only facilitate carbohydrate metabolism but also play important roles in sugar sensing in higher plants. HXK gene families have been extensively discussed in many plant species; however, comprehensive information regarding HXKs in sorghum remains unclear. To address this gap, we identified 7 putative sorghum HXKs (SbHXK1 to SbHXK7), and the features of their conserved domains, gene structure, evolutionary tree, and cis-acting elements were systematically characterized to reveal the evolutionary conservation between different plant species. Based on expression profiling, we found that different expression patterns of SbHXKs were associated with different physiological processes, including abiotic stresses. Further qRT-PCR verification under salt and sucrose treatment confirmed that SbHXK2, SbHXK4, and SbHXK5 may play very important roles under high osmotic pressure. Notably, SbHXKs are predominantly localized in the cytoplasm, in contrast to some rice and Arabidopsis HXKs, which are localized in chloroplasts or mitochondria, suggesting divergent roles for SbHXKs. In summary, our study provides a theoretical foundation for understanding the HXK gene family and offers fundamental insights of SbHXKs in sorghum.
引用
收藏
页数:13
相关论文
共 41 条
[1]   Guard-cell-targeted overexpression of Arabidopsis Hexokinase 1 can improve water use efficiency in field-grown tobacco plants [J].
Acevedo-Siaca, Liana G. ;
Glowacka, Katarzyna ;
Driever, Steven M. ;
Salesse-Smith, Coralie E. ;
Lugassi, Nitsan ;
Granot, David ;
Long, Stephen P. ;
Kromdijk, Johannes .
JOURNAL OF EXPERIMENTAL BOTANY, 2022, 73 (16) :5745-5757
[2]   Identification and validation of reference genes in vetiver (Chrysopogon zizanioides) root transcriptome [J].
Chauhan, Abhishek Singh ;
Tiwari, Madhu ;
Indoliya, Yuvraj ;
Mishra, Shashank Kumar ;
Lavania, Umesh Chandra ;
Chauhan, Puneet Singh ;
Chakrabarty, Debasis ;
Tripathi, Rudra Deo .
PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS, 2023, 29 (05) :613-627
[3]   TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data [J].
Chen, Chengjie ;
Chen, Hao ;
Zhang, Yi ;
Thomas, Hannah R. ;
Frank, Margaret H. ;
He, Yehua ;
Xia, Rui .
MOLECULAR PLANT, 2020, 13 (08) :1194-1202
[4]   Transport of Sugars [J].
Chen, Li-Qing ;
Cheung, Lily S. ;
Feng, Liang ;
Tanner, Widmar ;
Frommer, Wolf B. .
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 84, 2015, 84 :865-894
[5]   Sugar sensing in C4 source leaves: a gap that needs to be filled [J].
Chen, Lily ;
Ghannoum, Oula ;
Furbank, Robert T. .
JOURNAL OF EXPERIMENTAL BOTANY, 2024, :3818-3834
[6]   Role of the Rice Hexokinases OsHXK5 and OsHXK6 as Glucose Sensors [J].
Cho, Jung-Il ;
Ryoo, Nayeon ;
Eom, Joon-Seob ;
Lee, Dae-Woo ;
Kim, Hyun-Bi ;
Jeong, Seok-Won ;
Lee, Youn-Hyung ;
Kwon, Yong-Kook ;
Cho, Man-Ho ;
Bhoo, Seong Hee ;
Hahn, Tae-Ryong ;
Park, Youn-Il ;
Hwang, Ildoo ;
Sheen, Jen ;
Jeon, Jong-Seong .
PLANT PHYSIOLOGY, 2009, 149 (02) :745-759
[7]   Genome-wide identification and expression analysis of the U-box E3 ubiquitin ligase gene family related to salt tolerance in sorghum (Sorghum bicolor L.) [J].
Cui, Jianghui ;
Ren, Genzeng ;
Bai, Yuzhe ;
Gao, Yukun ;
Yang, Puyuan ;
Chang, Jinhua .
FRONTIERS IN PLANT SCIENCE, 2023, 14
[8]   The hexokinase Gene Family in Cotton: Genome-Wide Characterization and Bioinformatics Analysis [J].
Dou, Lingling ;
Li, Zihan ;
Wang, Huiqin ;
Li, HuaiZhu ;
Xiao, Guanghui ;
Zhang, Xianliang .
FRONTIERS IN PLANT SCIENCE, 2022, 13
[9]   The Pfam protein families database in 2019 [J].
El-Gebali, Sara ;
Mistry, Jaina ;
Bateman, Alex ;
Eddy, Sean R. ;
Luciani, Aurelien ;
Potter, Simon C. ;
Qureshi, Matloob ;
Richardson, Lorna J. ;
Salazar, Gustavo A. ;
Smart, Alfredo ;
Sonnhammer, Erik L. L. ;
Hirsh, Layla ;
Paladin, Lisanna ;
Piovesan, Damiano ;
Tosatto, Silvio C. E. ;
Finn, Robert D. .
NUCLEIC ACIDS RESEARCH, 2019, 47 (D1) :D427-D432
[10]   Structure, Expression, and Functional Analysis of the Hexokinase Gene Family in Cassava [J].
Geng, Meng-Ting ;
Yao, Yuan ;
Wang, Yun-Lin ;
Wu, Xiao-Hui ;
Sun, Chong ;
Li, Rui-Mei ;
Fu, Shao-Ping ;
Duan, Rui-Jun ;
Liu, Jiao ;
Hu, Xin-Wen ;
Guo, Jian-Chun .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2017, 18 (05)