Genetic and morphological shifts associated with climate change in a migratory bird

被引:1
作者
Adams, Nicole [1 ,2 ,3 ]
Dias, Tiffany [4 ]
Skeen, Heather R. [5 ,6 ]
Pegan, Teresa [2 ,3 ,7 ]
Willard, David E. [8 ]
Winger, Ben [2 ,3 ]
Ruegg, Kristen [9 ]
Weeks, Brian C. [4 ]
Bay, Rachael [1 ]
机构
[1] Univ Calif Davis, Dept Evolut & Ecol, Davis, CA 95616 USA
[2] Univ Michigan, Dept Ecol & Evolutionary Biol, Ann Arbor, MI 48109 USA
[3] Univ Michigan, Museum Zool, Ann Arbor, MI 48109 USA
[4] Univ Michigan, Sch Environm & Sustainabil, Ann Arbor, MI 48109 USA
[5] Field Museum Nat Hist, Negaunee Integrat Res Ctr, Chicago, IL 60605 USA
[6] Univ Connecticut, Dept Mol & Cell Biol, Storrs, CT 06269 USA
[7] Harvard Univ, Dept Organism & Evolutionary Biol, Cambridge, MA 02138 USA
[8] Field Museum Nat Hist, Gantz Family Collect Ctr, Chicago, IL 60605 USA
[9] Colorado State Univ, Dept Biol, Ft Collins, CO 80523 USA
关键词
Adaptation; Global change; Genomics; GWAS; BERGMANNS RULE; BODY-SIZE; R PACKAGE; POPULATION; EVOLUTION; BMP4;
D O I
10.1186/s12915-024-02107-5
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
BackgroundRapid morphological change is emerging as a consequence of climate change in many systems. It is intuitive to hypothesize that temporal morphological trends are driven by the same selective pressures that have established well-known ecogeographic patterns over spatial environmental gradients (e.g., Bergman's and Allen's rules). However, mechanistic understanding of contemporary morphological shifts is lacking.ResultsWe combine morphological data and whole genome sequencing from a four-decade dataset in the migratory bird hermit thrush (Catharus guttatus) to test whether morphological shifts over time are accompanied by genetic change. Using genome-wide association, we identify alleles associated with body size, bill length, and wing length. Shifts in morphology and concordant shifts in morphology-associated alleles over time would support a genetic basis for the observed changes in morphology over recent decades, potentially an adaptive response to climate change. In our data, bill size decreases were paralleled by genetic shifts in bill size-associated alleles. On the other hand, alleles associated with body size showed no shift in frequency over time.ConclusionsTogether, our results show mixed support for evolutionary explanations of morphological response to climate change. Temporal shifts in alleles associated with bill size support the hypothesis that selection is driving temporal morphological trends. The lack of evidence for genetic shifts in body size alleles could be explained by a large role of plasticity or technical limitations associated with the likely polygenic architecture of body size, or both. Disentangling the mechanisms responsible for observed morphological response to changing environments will be vital for predicting future organismal and population responses to climate change.
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页数:13
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[11]   RAPID AND SIMPLE METHOD FOR PURIFICATION OF NUCLEIC-ACIDS [J].
BOOM, R ;
SOL, CJA ;
SALIMANS, MMM ;
JANSEN, CL ;
WERTHEIMVANDILLEN, PME ;
VANDERNOORDAA, J .
JOURNAL OF CLINICAL MICROBIOLOGY, 1990, 28 (03) :495-503
[12]   EVOLUTIONARY RESPONSE TO GLOBAL CLIMATIC-CHANGE [J].
BRADSHAW, AD ;
MCNEILLY, T .
ANNALS OF BOTANY, 1991, 67 :5-14
[13]   Genomic Prediction of (Mal)Adaptation Across Current and Future Climatic Landscapes [J].
Capblancq, Thibaut ;
Fitzpatrick, Matthew C. ;
Bay, Rachael A. ;
Exposito-Alonso, Moises ;
Keller, Stephen R. .
ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 51, 2020, 2020, 51 :245-269
[14]   assignPOP: An R package for population assignment using genetic, non-genetic, or integrated data in a machine-learning framework [J].
Chen, Kuan-Yu ;
Marschall, Elizabeth A. ;
Sovic, Michael G. ;
Fries, Anthony C. ;
Gibbs, H. Lisle ;
Ludsin, Stuart A. .
METHODS IN ECOLOGY AND EVOLUTION, 2018, 9 (02) :439-446
[15]   The practice and promise of temporal genomics for measuring evolutionary responses to global change [J].
Clark, Rene D. ;
Catalano, Katrina A. ;
Fitz, Kyra S. ;
Garcia, Eric ;
Jaynes, Kyle E. ;
Reid, Brendan N. ;
Sawkins, Allyson ;
Snead, Anthony A. ;
Whalen, John C. ;
Pinsky, Malin L. .
MOLECULAR ECOLOGY RESOURCES, 2025, 25 (05)
[16]   Widespread recent changes in morphology of Old World birds, global warming the immediate suspect [J].
Dubiner, Shahar ;
Meiri, Shai .
GLOBAL ECOLOGY AND BIOGEOGRAPHY, 2022, 31 (04) :791-801
[17]   Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt [J].
Durinck, Steffen ;
Spellman, Paul T. ;
Birney, Ewan ;
Huber, Wolfgang .
NATURE PROTOCOLS, 2009, 4 (08) :1184-1191
[18]   Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP [J].
Endelman, Jeffrey B. .
PLANT GENOME, 2011, 4 (03) :250-255
[19]   Genetics of Climate Change Adaptation [J].
Franks, Steven J. ;
Hoffmann, Ary A. .
ANNUAL REVIEW OF GENETICS, VOL 46, 2012, 46 :185-208
[20]   Genome-Wide Association Study of Egg-Laying Traits and Egg Quality in LingKun Chickens [J].
Gao, Jinfeng ;
Xu, Wenwu ;
Zeng, Tao ;
Tian, Yong ;
Wu, Chunqin ;
Liu, Suzhen ;
Zhao, Yan ;
Zhou, Shuhe ;
Lin, Xinqin ;
Cao, Hongguo ;
Lu, Lizhi .
FRONTIERS IN VETERINARY SCIENCE, 2022, 9